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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACAACTATTTCTTTGCCTTGTCAAAATACCAGCATCAACTGGAAGATCTACTGACAAAAAATCCTAATTTTGTACGGCCATCACATCGCTTGAATGAGgtgatgctataatcctcattcttatgaatcaaaatttgttttcaatctattttattttatcaatttattgcacattgctggtgtattgagttaacacaca...

Basic information

species Oryza sativa
transcript LOC_Os03g11120.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g11120.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G029055_T02 (Zea mays), 5'ss of exon 4
AGACAACTATTTCTTTGCCTTGTCAAAATACCAGCATCAACTGGAAGATCTACTGACAAAAAATCCTAATTTTGTACGGCCATCACATCGCTTGAATGAGgtgatgctataatcctcattcttatgaatcaaaatt---tgttttcaatctattttattttat-caatttattgcacattgctggtgtattgagttaacacaca
||| ||||||||||||||||||||||| ||||| ||| || ||||||| |||||||||| ||||||| |||||||| |||||||| |||||||||| ||||||| | | || |||| ||| ||||     |   ||   ||||||   | |  || | ||  |  ||   ||  || |||| |||||      || ||      
AGATAACTATTTCTTTGCCTTGTCAAAGTACCAACATAAATTGGAAGAGCTACTGACAAGAAATCCTGATTTTGTAAGGCCATCATATCGCTTGAACGAGgtgaggttttagtcct-atttttatatgctattgttcaatgtttttgttattgttgagttactataaaccatcacaaattg-tggtgggaaatgtaaaactg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29618323|gb|CB623335.1|CB623335
EST:     TACTGACAAAAAATCCTAATTTTGTACGGCCATCACATCGCTTGAATGAG                         GTCCAAGGATGGGTTAAAAGTGGATTAAGGGACTTCTCTATTTCCCGTGCA
genomic: TACTGACAAAAAATCCTAATTTTGTACGGCCATCACATCGCTTGAATGAGgtgatgctat ... acagttgtagGTCCAAGGATGGGTTAAAAGTGGATTAAGGGACTTCTCTATTTCCCGTGCA
EST: gi|29619403|gb|CB624415.1|CB624415
EST:     TACTGACAAAAAATCCTAATTTTGTACGGCCATCACATCGCTTGAATGAG                         GTCCAAGGATGGGTTAAAAGTGGATTAAGGGACTTCTCTATTTCCCGTGCA
genomic: TACTGACAAAAAATCCTAATTTTGTACGGCCATCACATCGCTTGAATGAGgtgatgctat ... acagttgtagGTCCAAGGATGGGTTAAAAGTGGATTAAGGGACTTCTCTATTTCCCGTGCA