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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTATGACAACAGGTGATATTGATCCTGCAGTATTAGCTTCACTCCCTCCATCAATGCAGTTGGATCTTCTTGTTCAGgtaaagaggatgaactactggttctcatgtttctccttggtaccttaaactgtatgcaaccagagactaatttaagagaatatgattggtttag

Basic information

species Oryza sativa
transcript LOC_Os03g10780.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g10780.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G388915_T01 (Zea mays), 5'ss of exon 5
CCTATGACAACAGGTGATATTGATCCTGCAGTATTAGCTTCACTCCCTCCATCAATGCAGTTGGATCTTCTTGTTCAGgtaaagaggatgaactac---tggttctcatgtttctccttggtaccttaaactgtatgcaaccagaga-ctaatttaagagaatatgattggtttag
||||||||||| ||||| ||||||||||||||||| ||||| || |||||||| |||||||| ||||||||||||||||||||  || | |  |||   || |||| | | ||  |||   | |   |||  | ||  |   ||| | || ||||       | || ||| |||||
CCTATGACAACTGGTGACATTGATCCTGCAGTATTGGCTTCCCTTCCTCCATCGATGCAGTTAGATCTTCTTGTTCAGgtaaaaggggtaacatacaaatgcttcttacgattgccct--atgctacaaa--gcatcaaggaagatatcttatttccctttttgtgtttgctttag

upper sequence: LOC_Os03g10780.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA01G16370.1 (Glycine max), 5'ss of exon 7
CCTATGACAACAGGTGATATTGATCCTGCAGTATTAGCTTCACTCCCTCCATCAATGCAGTTGGATCTTCTTGTTCAGgtaaagagg---atgaactactggttctcatgtttctccttggtaccttaaactgtatgcaaccagagactaatttaagagaatatgattggtttag
||    |     ||| | ||||||||||| ||  |||| ||| | ||||||||||||||  |||| ||||||||||||||||    |   || || || |  ||   |       ||||  ||| ||  | | |  |  | ||| || | | | |  |   |             
CCAGCTATGCATGGTAAAATTGATCCTGCTGTTCTAGCCTCATTGCCTCCATCAATGCAACTGGACCTTCTTGTTCAGgtaattgagttcataaagtatttttttagaaaaagtaccttt-tacattttattct--gatatcagtgattgaataattattctgcag---------

upper sequence: LOC_Os03g10780.1 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv14s0066g01630.t01 (Vitis vinifera), 5'ss of exon 5
CCTATGACAACAGGTGATATTGATCCTGCAGTATTAGCTTCACTCCCTCCATCAATGCAGTTGGATCTTCTTGTTCAGgtaaa----gaggatg---aactactggttctcatgt-ttctccttggta----------ccttaaactgtatgcaaccagagactaatttaagagaatatgattg-gtttag---
|| || |  |  ||  |  | ||||| || ||||||||| || | ||||||||||||||| | ||||||||||| |||| ||      |  ||    || ||  | ||||| ||  ||||  ||| |           || |   || | | |      |  || |||||||| | |    ||  |||| |   
CCAATTATGAATGGAAAAGTCGATCCAGCTGTATTAGCTGCATTGCCTCCATCAATGCAGCTTGATCTTCTTGTGCAGgcaagtcataaatatacataattatggattctcgtgagttctgtttgttcagcaccctttccctttgctttgtactcatttattcttatttaagacactgaatttctgttttgtag