Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACGGCTACATGCTGCGTCTGTTCTGTATCGGCTTCACCAAGCGGCGGCCTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcatttccaaggtctcttactgattgatgtatattggtccactgttgagcagctgctatatttactgtctttgattgcaatctgcccag

Basic information

species Oryza sativa
transcript LOC_Os03g10340.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g10340.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 4
AGACGGCTACATGCTGCGTCTGTTCTGTATCGGCTTCACCAAGCGGCGGCCTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcatttccaaggtctcttactgattgat-----gtatattggtccac-tgttgagcagctgctatatttactgtc--tttgattgcaatctgcccag
 ||    || |   || |  ||||||| || ||||| || ||| ||||   |||||||||||||||||| || ||||| ||| |||| || ||||||||||||   | | | |  |    ||||| |||||  |      | ||||  | ||  | |   |   |||  |||| | |   |  | | || | ||| ||  |  
TGATAATTATACATTGAGGATGTTCTGCATTGGCTTTACTAAGAGGCGTAGTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttactgc--aacattcttattgatttgttttcaatctattctttcaaatatactgggactgggatatgttccaacattcttatggtaatttgaacc-

upper sequence: LOC_Os03g10340.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AT3G04840.1 (Arabidopsis thaliana), 5'ss of exon 5
AGACGGCTACATGCTGCGTCTGTTCTGTATCGGCTTCACCAAGCGGCGGCCTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcatttccaaggtctcttactgattgatgtatattggtccactg-ttgagcagctgctatatttactgtctttga---ttgcaatct--gcccag
 ||| | ||||  ||  | || |||||||||| |||||||||| | ||  |||||||||| |||||||||||||| |||||| | || || ||| | ||||||    ||  | |    |    ||||  | | |     |   | ||    |||| |   | || |  ||||||  |   |   |||||||||  |  | |
CGACAGTTACACTCTCAGGCTATTCTGTATCGCCTTCACCAAGAGACGTGCTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacacattcccc-tgcaatacttgtagttaggcctgactacagaacttgatctctttctcttattactgaatcctacttttgcaatctttgatctg

upper sequence: LOC_Os03g10340.1 (Oryza sativa), 5'ss of exon 4
lower sequence: EFJ09804 (Selaginella moellendorffii), 5'ss of exon 5
AGACGGCTACATGCTGCGTCTGTTCTGTATCGGCTTCACCAAGCGGCGGCCTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcatttccaaggtctcttactgattgatgtatattggtccactgttgagcagctgctatatttactgtctttgattgcaatctgcccag
 |||  |||||   || | || ||||| || || |||||||| ||| |||| ||||||||||||||||||||||| |||||  | ||||||||| | ||||||   |       || |  |     ||   | |   ||       ||| | |  |||                                     
TGACAACTACACCTTGAGGCTCTTCTGCATTGGATTCACCAAACGGAGGCCCAACCAGGTGAAGAGGACTTGCTACGCTCAGTCAAGTCAGATCCGCCAGgtatacttgaaaagaaagagt-----tggccgttcattacaaacatactctcgcacag-------------------------------------

upper sequence: LOC_Os03g10340.1 (Oryza sativa), 5'ss of exon 4
lower sequence: EFJ11647 (Selaginella moellendorffii), 5'ss of exon 5
AGACGGCTACATGCTGCGTCTGTTCTGTATCGGCTTCACCAAGCGGCGGCCTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgta-atttcatttccaag-gtctcttactgattg-atgtatattggtccactgttgagcagctgctatatttactgtctttgattgcaatctgcccag
 |||  |||||   || | || ||||| || || |||||||| ||| |||| ||||||||||||||||||||||| |||||  | ||||||||| | |||||| | || |     ||| ||   |   | |||  |   ||  |    ||| |                                             
TGACAACTACACCTTGAGGCTCTTCTGCATTGGATTCACCAAACGGAGGCCCAACCAGGTGAAGAGGACTTGCTACGCTCAGTCAAGTCAGATCCGCCAGgtatacttgaaaagaaagagttggtcgttcattacaaacatcctctctcacag---------------------------------------------

upper sequence: LOC_Os03g10340.1 (Oryza sativa), 5'ss of exon 4
lower sequence: EFJ11589 (Selaginella moellendorffii), 5'ss of exon 5
AGACGGCTACATGCTGCGTCTGTTCTGTATCGGCTTCACCAAGCGGCGGCCTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgta-atttcatttccaag-gtctcttactgattgatgtatattggtccactgttgagcagctgctatatttactgtctttgattgcaatctgcccag
 |||  |||||   || | |||||||| ||||| |||||||||||| |||| ||||||||||||||||||||||| |||||  ||||||||||| | |||||| | || |     ||| ||    |  | ||| |   | |      |||| | | ||||                                     
TGACAACTACACCTTGAGGCTGTTCTGCATCGGATTCACCAAGCGGAGGCCCAACCAGGTGAAGAGGACTTGCTACGCTCAGTCGAGTCAGATCCGCCAGgtacacttgaaaagaaagagttggctgttcattaacaaaca------cactctcgtgcag-------------------------------------

upper sequence: LOC_Os03g10340.1 (Oryza sativa), 5'ss of exon 4
lower sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 5
AGACGGCTACATGCTGCGTCTGTTCTGTATCGGCTTCACCAAGCGGCGGCCTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgta-atttcatttccaag-gtctcttactgattgatgtatattggtccactgttgagcagctgctatatttactgtctttgattgcaatctgcccag
 |||  |||||   || | || ||||| || || |||||||||||| |||| ||||||||||||||||||||||| |||||  ||||||||||| | |||||| | || |     ||| || |  |  | ||| |   | ||       || | |  |||                                     
TGACAACTACACCTTGAGGCTCTTCTGCATTGGATTCACCAAGCGGAGGCCCAACCAGGTGAAGAGGACTTGCTACGCTCAGTCGAGTCAGATCCGCCAGgtacacttgaaaagaaagagtttgctgttcattaacaaacat------gctctcgtacag-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38482443|gb|CF966481.1|CF966481
EST:     TAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGGAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: TAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|86523708|gb|CI163914.1|CI163914
EST:     AAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: AAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|33664975|gb|CF295942.1|CF295942
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCT
EST: gi|702558|gb|D48849.1|D48849
EST:     CTAACCAGGTGANGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGTTT-AAGCTGTGA
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATT-CGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGA
EST: gi|87020240|gb|CI261104.1|CI261104
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|38481755|gb|CF965830.1|CF965830
EST:     TAACCAGGTGAAGAGGACTTGCTATGCTCAACGCGAGTCACATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: TAACCAGGTGAAGAGGACTTGCTATGCTCAA-GCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|88960672|gb|CI382353.1|CI382353
EST:     AGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCAT-GCCAACCAGGCTTCAAGCTGTGAT
genomic: AGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|33687117|gb|CF315356.1|CF315356
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|89169892|gb|CI110251.1|CI110251
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGGTGA
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCT-GTGA
EST: gi|86522285|gb|CI162491.1|CI162491
EST:     GCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: GCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|58672107|gb|CK060793.1|CK060793
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTT
EST: gi|33689659|gb|CF317898.1|CF317898
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|218488713|gb|FG953590.1|FG953590
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGG
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGG
EST: gi|86900549|gb|CI298384.1|CI298384
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|88241588|gb|CI241437.1|CI241437
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|33659524|gb|CF282137.1|CF282137
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTG
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTG
EST: gi|218499634|gb|FG959031.1|FG959031
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|86829565|gb|CI286753.1|CI286753
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|27576934|gb|CA999628.1|CA999628
EST:     TATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: TATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|86419509|gb|CI054310.1|CI054310
EST:     AGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: AGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|33811315|gb|CF331547.1|CF331547
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|27578093|gb|CB000788.1|CB000788
EST:     TCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: TCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|86854351|gb|CI254296.1|CI254296
EST:     ATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: ATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|27577986|gb|CB000681.1|CB000681
EST:     TATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: TATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|33693693|gb|CF321932.1|CF321932
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|58681868|gb|CK070555.1|CK070555
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|58677042|gb|CK065729.1|CK065729
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|33683407|gb|CF311646.1|CF311646
EST:     AGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: AGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|58612772|gb|CK040484.1|CK040484
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAG
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAG
EST: gi|38469895|gb|CF954026.1|CF954026
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|33693694|gb|CF321933.1|CF321933
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|87008484|gb|CI314942.1|CI314942
EST:     GTGAAGAGGACTGGCTATGCTCAACCGAGTCAGATCAGACAG                         ATTCGTCGCCAAGATGGTTGAAATCATGGCCCAACCAGGCTTCAAGCTGTG
genomic: GTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCG-CAAGATGGTTGAAATCATGG-CCAACCAGGCTTCAAGCTGTG
EST: gi|33805842|gb|CF328800.1|CF328800
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGA
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGA
EST: gi|58691942|gb|CK080629.1|CK080629
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|88199248|gb|CI199098.1|CI199098
EST:     AGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: AGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|33820637|gb|CF336131.1|CF336131
EST:     CTAACCAGGTGAAGAGGACTTGCTATG-TCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|33805844|gb|CF328801.1|CF328801
EST:     TAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: TAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|88215341|gb|CI215190.1|CI215190
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|27576218|gb|CA998912.1|CA998912
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|33817188|gb|CF334429.1|CF334429
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCAT
EST: gi|33659525|gb|CF282138.1|CF282138
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|7134746|gb|AU082651.1|AU082651
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|27576939|gb|CA999633.1|CA999633
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|88995551|gb|CI022874.1|CI022874
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|88830459|gb|CI010659.1|CI010659
EST:     CCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|33817189|gb|CF334430.1|CF334430
EST:     TAACCAGGTGAAGAGGACTTGCTATG-TCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: TAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|27554311|gb|CA998211.1|CA998211
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|15856851|gb|BI809663.1|BI809663
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|29627211|gb|CB632222.1|CB632222
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|88246476|gb|CI246325.1|CI246325
EST:     GCGAGTCAGATCAGACAG                         ATTCGTCGCTAGATGGTTGAAATCATGTCCAACCAGGCTTCAAGCTGTGAT
genomic: GCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|44679482|gb|CR292916.1|CR292916
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCCAGATGGTTGAAATCATGGCCAACCAGGCTTC
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTC
EST: gi|58680509|gb|CK069196.1|CK069196
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|15850788|gb|BI799064.1|BI799064
EST:     AGCGATTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: AGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|88836441|gb|CI078338.1|CI078338
EST:     GCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: GCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|89184653|gb|CI007078.1|CI007078
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|88836217|gb|CI371322.1|CI371322
EST:     AGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTTTGAT
genomic: AGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|88991366|gb|CI034701.1|CI034701
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|58692773|gb|CK081460.1|CK081460
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTT
EST: gi|58675823|gb|CK064510.1|CK064510
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|89195929|gb|CI007348.1|CI007348
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|87033282|gb|CI187906.1|CI187906
EST:     CAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|218490503|gb|FG960676.1|FG960676
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|58596560|gb|CK007088.1|CK007088
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|88975218|gb|CI023469.1|CI023469
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|86530853|gb|CI171059.1|CI171059
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|33687118|gb|CF315357.1|CF315357
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|86874368|gb|CI316734.1|CI316734
EST:     GAGGACT-GCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: GAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|33689922|gb|CF318161.1|CF318161
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATG
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATG
EST: gi|29627212|gb|CB632223.1|CB632223
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|8858189|gb|AU095507.1|AU095507
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|58661504|gb|CK050184.1|CK050184
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATG
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATG
EST: gi|33808922|gb|CF330347.1|CF330347
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|163918509|gb|EG711439.1|EG711439
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|88901503|gb|CI008931.1|CI008931
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
EST: gi|87035333|gb|CI189955.1|CI189955
EST:     CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAG                         ATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT
genomic: CTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 71 (downstream exon)
Score: 185

AGACGGCTACATGCTGCGTCTGTTCTGTATCGGCTTCACCAAGCGGCGGCCTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcat ... atctgcccagATTCGTCGCAAGATGGTTGAAATCATGGCCAACCAGGCTTCAAGCTGTGATTTGAAAGAGCTAGTTTCAAAGTTCATTCCTGAAGTTATTGGGAAGGAAA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGACGGCTACATGCTGCGTCTGTTCTGTATCGGCTTCACCAAGCGGCGGCCTAACCAGGTGAAGAGGACTTGCTATGCTCAAGCGAGTCAGATCAGACAGgtaatttcatttccaaggtctcttactgattgatgtatattggtccactgttgagcagctgctatatttactgtctttgattgcaatctgcccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA