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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACACAACGAGGCGGAGATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGgttagtatctgtcggtatttagttcttaaatcagcagttcattaagtttacataaaagtaccagctgctcccaaaattaaatagatcctctgttctgttc...

Basic information

species Oryza sativa
transcript LOC_Os03g09140.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g09140.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AC166636.1_FGT008 (Zea mays), 5'ss of exon 4
TTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACACAACGAGGCGGAGATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGgttagtatctgtcgg-tatttagttcttaaatcagcagttcat-taagtttacataaaagtaccagctgctcccaaa--attaaatagatcctctgttctgttc
| ||||  |  || |||||||| || || ||||| || ||| |||| ||||| ||| ||||| |||| |||||||||||||| |||||||| ||||||||||| ||||||||    ||     |  |   |||| ||   | | ||  | | | |  || ||     |  ||   |    || |||| ||   ||  |      
TCTTGAACACGTCAAAGTGGATCGAGGAAGTAAACACGCAAAGAGGTGGAGACGTGCTCATCTTCCTCGTTGGAAATAAAACTGACCTTGTCGACAAGAGgtttgtatctgtgaaatagggtatattaggatcaccaaaacctgtagatgtccgtccaactaaagtttagtcatgagttgtttaatacatgaactactga----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33682509|gb|CF310748.1|CF310748
EST:     GATGTGATCATCGTCC-TGTTGGAAATAAAACAGACCTTGTTGACAAGAG                         GCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCAT
genomic: GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGgttagtatct ... atgtcaacagGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCAT
EST: gi|33684734|gb|CF312973.1|CF312973
EST:     GATGTGATCATCGTCCTTG-TGGAAATAAAACAGACCTTGTTGACAAGAG                         GCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCAT
genomic: GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGgttagtatct ... atgtcaacagGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCAT
EST: gi|16577976|gb|BI812071.1|BI812071
EST:     GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAG                         GCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCAT
genomic: GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGgttagtatct ... atgtcaacagGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCAT
EST: gi|33684735|gb|CF312974.1|CF312974
EST:     GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAG                         GCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCAT
genomic: GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGgttagtatct ... atgtcaacagGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCAT
EST: gi|33682508|gb|CF310747.1|CF310747
EST:     GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAG                         GCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCAT
genomic: GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGgttagtatct ... atgtcaacagGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCAT