1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTATGTTGAAAGCTTCAAAAGGAAGTTTGCATCGCAGgtacacgggtaatcaattggttactagtttatgtctgtttgaaggcaattgggatgcctcctgctcaaatagctctgcttaaattgacaatgtgtcaaaacgttccattaatttgccgcctaatgtcattcaatacttcatgttgcggtttgtgtgtatcattgttggctatctttctgcag
species | Oryza sativa |
transcript | LOC_Os03g07990.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTATGTTGAAAGCTTCAAAAGGAAGTTTGCATCGCAG GAATTTCATGCATTAAAGAGGCGATGTAGCAAGCTGCAAGGAGAGAAGTATEST: gi|29666252|gb|CB662527.1|CB662527
genomic: CTATGTTGAAAGCTTCAAAAGGAAGTTTGCATCGCAGgtacacgggt ... ctttctgcagGAATTTCATGCATTAAAGAGGCGATGTAGCAAGCTGCAAGGAGAGAAGTAT
EST: CTATGTTGAAAGCTTCAAAAGGAAGTTTGCATCGCAG GAATTTCATGCATTAAAGAGGCGATGTAGCAAGCTGCAAGGAGAGAAGTATEST: gi|29641601|gb|CB646608.1|CB646608
genomic: CTATGTTGAAAGCTTCAAAAGGAAGTTTGCATCGCAGgtacacgggt ... ctttctgcagGAATTTCATGCATTAAAGAGGCGATGTAGCAAGCTGCAAGGAGAGAAGTAT
EST: CTATGTTGAAAGCTTCAAAAGGAAGTTTGCATCGCAG GAATTTCATGCATTAAAGAGGCGATGTACCAAGCTGCAAGGAGAGAAGTATEST: gi|29641602|gb|CB646609.1|CB646609
genomic: CTATGTTGAAAGCTTCAAAAGGAAGTTTGCATCGCAGgtacacgggt ... ctttctgcagGAATTTCATGCATTAAAGAGGCGATGTAGCAAGCTGCAAGGAGAGAAGTAT
EST: CTATGTTGAAAGCTTCAAAAGGAAGTTTGCATCGCAG GAATTTCATGCATTAAAGAGGCGATGTAGCAAGCTGCAAGGAGAGAAGTAT
genomic: CTATGTTGAAAGCTTCAAAAGGAAGTTTGCATCGCAGgtacacgggt ... ctttctgcagGAATTTCATGCATTAAAGAGGCGATGTAGCAAGCTGCAAGGAGAGAAGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATGTTGAAAGCTTCAAAAGGAAGTTTGCATCGCAGgtacacgggtaatcaattggttactagtttatgtctgtttgaaggcaattgggatgcctcctgctcaaatagctctgcttaaattgacaatgtgtcaaaacgttccattaatttgccgcctaatgtcattcaatacttcatgttgcggtttgtgtgtatcattgttggctatctttctgcag
- - - - - - - - - AAGGAA