1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TCCTTTGCTAGGTCACACAAGCTAGACACCATGTTCGACGATGTGTCTGAATGTGAAATTCATTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAGgtatttttcctcaactaagattttgacatgatccttgcttctctatacattaacaagttgaaccgacaaatctttaacaatttgtcaaactatattattatagctcagccatgtgtaaactcattgcactatctgatgccaatttgttgcacaaacttgaaccaacttcttcctcctcccaacag
species | Oryza sativa |
transcript | LOC_Os03g06410.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGTGAAATTCATTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAG GTTCATATGGAGAGGTGTACCGTGCTGATTGGAATGGAACAEST: gi|569642|gb|D40491.1|D40491
genomic: ATGTGAAATTCATTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAGgtatttttcc ... ctcccaacagGTTCATATGGAGAGGTGTACCGTGCTGATTGGAATGGAACA
EST: ATGTGAAATTCATTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAG GTTCATATGGAGAGGTGTACCGTGCTGATTGGAATGGAACAEST: gi|58596848|gb|CK007376.1|CK007376
genomic: ATGTGAAATTCATTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAGgtatttttcc ... ctcccaacagGTTCATATGGAGAGGTGTACCGTGCTGATTGGAATGGAACA
EST: ATGTGAAATTCATTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAG GTTCATATGGAGAGGTGTACCGTGCTGATTGGAATGGAACAEST: gi|569641|gb|D40490.1|D40490
genomic: ATGTGAAATTCATTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAGgtatttttcc ... ctcccaacagGTTCATATGGAGAGGTGTACCGTGCTGATTGGAATGGAACA
EST: ATGTGAAATTCATTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAG GTTCATATGGAGAGGTGTACCGTGCTGATTGGAATGGAACAEST: gi|38475096|gb|CF959229.1|CF959229
genomic: ATGTGAAATTCATTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAGgtatttttcc ... ctcccaacagGTTCATATGGAGAGGTGTACCGTGCTGATTGGAATGGAACA
EST: ATGTGAAATTCATTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAG GTTCATATGGAGAGGTGTACCGTGCTGATTGGGGTGGAACAEST: gi|571627|gb|D41138.1|D41138
genomic: ATGTGAAATTCATTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAGgtatttttcc ... ctcccaacagGTTCATATGGAGAGGTGTACCGTGCTGATTGGAATGGAACA
EST: ATGTGAAATTCATTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAG GTTCATATGGAGAGGTGTACCGTGCTGATTGGAATGGAACAEST: gi|58688165|gb|CK076852.1|CK076852
genomic: ATGTGAAATTCATTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAGgtatttttcc ... ctcccaacagGTTCATATGGAGAGGTGTACCGTGCTGATTGGAATGGAACA
EST: ATGTGAAATTCATTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAG GTTCATATGGAGAGGTGTACCGTGCTGATTGGAATGGAACA
genomic: ATGTGAAATTCATTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAGgtatttttcc ... ctcccaacagGTTCATATGGAGAGGTGTACCGTGCTGATTGGAATGGAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTTTGCTAGGTCACACAAGCTAGACACCATGTTCGACGATGTGTCTGAATGTGAAATTCATTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAGgtatttttcctcaactaagattttgacatgatccttgcttctctatacattaacaagttgaaccgacaaatctttaacaatttgtcaaactatattattatagctcagccatgtgtaaactcattgcactatctgatgccaatttgttgcacaaacttgaaccaacttcttcctcctcccaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA