1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTAACTGTCGGTGCATCATTTTTATCACAAACATTGGCTTTGGAGGACTCAACAATAGTGAAATTTGAAATATGGGATACCGCTGGACAAGAGAGgtacacatacagcactatggttttagcttcttccaatcttgggataatggcatgctgttggtgcattagaagcattggttttgtgagaaagttctagtagtatgtgttactgatttttacaattgatccatcttacgtgccacacatgcatatggtttttctcaatcaagaactcattggtaccagccaattttag
species | Oryza sativa |
transcript | LOC_Os03g05740.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GACTCACCAATAGTGAAATTTGAAATATGGGATACCGCTGGACAAGAGAG GTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTGTEST: gi|3760086|gb|C97344.1|C97344
genomic: GACTCAACAATAGTGAAATTTGAAATATGGGATACCGCTGGACAAGAGAGgtacacatac ... ccaattttagGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTGT
EST: GACTCAACAATAGTGAAATTTGAAATATGGGATACCGCTGGACAAGAGAG GTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTGTEST: gi|6782805|gb|C99985.1|C99985
genomic: GACTCAACAATAGTGAAATTTGAAATATGGGATACCGCTGGACAAGAGAGgtacacatac ... ccaattttagGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTGT
EST: GACTCAACAATAGTGAAATTTGAAATATGGGATACCGCTGGACAAGAGAG GTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTGTEST: gi|300216317|gb|HO088102.1|HO088102
genomic: GACTCAACAATAGTGAAATTTGAAATATGGGATACCGCTGGACAAGAGAGgtacacatac ... ccaattttagGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTGT
EST: GACTCAACAATAGTGAAATTTGAAATATGGGATACCGCTGGACAAGAGAG GTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTGTEST: gi|25803490|gb|CA759389.1|CA759389
genomic: GACTCAACAATAGTGAAATTTGAAATATGGGATACCGCTGGACAAGAGAGgtacacatac ... ccaattttagGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTGT
EST: GACTCACCAATAGTGAAATTTGAAATATGGGATACCGCTGGACAAGAGAG GTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTGTEST: gi|325493687|gb|JG458211.1|JG458211
genomic: GACTCAACAATAGTGAAATTTGAAATATGGGATACCGCTGGACAAGAGAGgtacacatac ... ccaattttagGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTGT
EST: GAAATTTGAAATATGGGATACCGGTGGACAAGAGAG GTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTGT
genomic: GAAATTTGAAATATGGGATACCGCTGGACAAGAGAGgtacacatac ... ccaattttagGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAACTGTCGGTGCATCATTTTTATCACAAACATTGGCTTTGGAGGACTCAACAATAGTGAAATTTGAAATATGGGATACCGCTGGACAAGAGAGgtacacatacagcactatggttttagcttcttccaatcttgggataatggcatgctgttggtgcattagaagcattggttttgtgagaaagttctagtagtatgtgttactgatttttacaattgatccatcttacgtgccacacatgcatatggtttttctcaatcaagaactcattggtaccagccaattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA