1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGTTTCACAAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAGgtaatcattgtttgcctatttaaatcaaattattatttggtgggaaccttgttccatttcagctgctgttgatgcttccccatttctaaaatataagtat...
species | Oryza sativa |
transcript | LOC_Os03g05280.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACCAAGGTGGACAAG AATGAGGAAAGGATGGTGACAAGGGAAGAAGGTCTTGCCTTTGCCCAGGAAEST: gi|58592544|gb|CF990852.1|CF990852
genomic: GACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAA-CAAGGTGGACAAGgtaatcattg ... tacattgtagAATGAGGAAAGGATGGTGACAAGGGAAGAAGGTCTTGCCTTTGCCCAGGAA
EST: CGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAG AATGAGGAAAGGATGGTGACAAGGGAAGAAGGTCTTGCCTTTGCCCAGGEST: gi|33691502|gb|CF319741.1|CF319741
genomic: CGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAGgtaatcattg ... tacattgtagAATGAGGAAAGGATGGTGACAAGGGAAGAAGGTCTTGCCTTTGCCCAGG
EST: CGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAG AATGAGGAAAGGATGGTGACAAGGGAAGAAGGTCTTGCCTTTGCCCAGGAAEST: gi|33693314|gb|CF321553.1|CF321553
genomic: CGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAGgtaatcattg ... tacattgtagAATGAGGAAAGGATGGTGACAAGGGAAGAAGGTCTTGCCTTTGCCCAGGAA
EST: CGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAG AATGAGGAAAGGATGGTGACAAGEST: gi|58589049|gb|CF987357.1|CF987357
genomic: CGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAGgtaatcattg ... tacattgtagAATGAGGAAAGGATGGTGACAAG
EST: CGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAG AATGAGGAAAGGATGGTGACAAGGGAAGAAGGTCTTGCCTTTGCCCAGGAA
genomic: CGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAGgtaatcattg ... tacattgtagAATGAGGAAAGGATGGTGACAAGGGAAGAAGGTCTTGCCTTTGCCCAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTTTCACAAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAGgtaatcattgtttgcctatttaaatcaaattattatttggtgggaaccttgttccatttcagctgctgttgatgcttccccatttctaaaatataagtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcccc