Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTATTTGTAAGTCTCGCCTATACTACTGCTTATTGAATCCTTTTCTTTCTTTCTTTCTTTTTTGAACCAGAGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcctctactgatgttcactatcagaactgtctttcacagaactatcagatacatatgtcaacttctagagagtcatataggctaagattttttt...

Basic information

species Oryza sativa
transcript LOC_Os03g03920.4
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88955460|gb|CI091552.1|CI091552
EST:     ACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: ACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|86413823|gb|CI068030.1|CI068030
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|88850993|gb|CI096383.1|CI096383
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|157650080|gb|EX449714.1|EX449714
EST:     GCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: GCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|87020032|gb|CI277764.1|CI277764
EST:     AGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|86486868|gb|CI129501.1|CI129501
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|88849094|gb|CI087616.1|CI087616
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|86429591|gb|CI076272.1|CI076272
EST:     CCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCTACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: CCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|86482742|gb|CI125375.1|CI125375
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|89176589|gb|CI111305.1|CI111305
EST:     AGAGCGAACCCGATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG