1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGGAAATCAGATGGCTTATGATGATTTTTTTGTGTGTATAGCAATTAATCTCATTCCAGCAGTCCTTGATGTCACAACTTGGTCAACAACAAGCTGGCCCgtgagtattccccagttcaacttaacctgtttaagctcatcatgtttatgtataccttttctttttctaagttaattgttgagtgtaaaatcaagagatttttatttgtaagtctcgcctatactactgcttattgaatccttttctttctttctttcttttttgaaccag
species | Oryza sativa |
transcript | LOC_Os03g03920.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCATTCCAGCAGTCCTTGATGTCACAACTTGGTCAACAACAAGCTGGCCC AGAGCGAACCCAATCAGGTGCTGGTGCAGEST: gi|88955489|gb|CI091581.1|CI091581
genomic: TCATTCCAGCAGTCCTTGATGTCACAACTTGGTCAACAACAAGCTGGCCCgtgagtattc ... tttgaaccagAGAGCGAACCCAATCAGGTGCTGGTGCAG
EST: TCATTCCAGCAGTCCTGGATGTCACAACTTGGTCAACAACAAGCTGGCCC AGAGCGAACCCAATCAGGTGCTGGTGCAGEST: gi|88844161|gb|CI001218.1|CI001218
genomic: TCATTCCAGCAGTCCTTGATGTCACAACTTGGTCAACAACAAGCTGGCCCgtgagtattc ... tttgaaccagAGAGCGAACCCAATCAGGTGCTGGTGCAG
EST: TCATTCCAGCAGTCCTTGATGTCACAACTTGGTCAACAACAAGCTGGCCC AGAGCGAACCCAATCAGGTGCTGGTGCAGEST: gi|86482742|gb|CI125375.1|CI125375
genomic: TCATTCCAGCAGTCCTTGATGTCACAACTTGGTCAACAACAAGCTGGCCCgtgagtattc ... tttgaaccagAGAGCGAACCCAATCAGGTGCTGGTGCAG
EST: TCATTCCAGCAGTCCTTGATGTCACAACTTGGTCAACAACAAGCTGGCCC AGAGCGAACCCAATCAGGTGCTGGTGCAGEST: gi|86500583|gb|CI143216.1|CI143216
genomic: TCATTCCAGCAGTCCTTGATGTCACAACTTGGTCAACAACAAGCTGGCCCgtgagtattc ... tttgaaccagAGAGCGAACCCAATCAGGTGCTGGTGCAG
EST: TCATTCCAGCAGTCCTTGATGTCACAACTTGGTCAACAACAAGCTGGCCC AGAGCGAACCCAATCAGGTGCTGGTGCAGEST: gi|86486868|gb|CI129501.1|CI129501
genomic: TCATTCCAGCAGTCCTTGATGTCACAACTTGGTCAACAACAAGCTGGCCCgtgagtattc ... tttgaaccagAGAGCGAACCCAATCAGGTGCTGGTGCAG
EST: CTTGATGTCACAACTTGGTCAACAACAAGCTGGCCC AGAGCGAACCCAATCAGGTGCTGGTGCAG
genomic: CTTGATGTCACAACTTGGTCAACAACAAGCTGGCCCgtgagtattc ... tttgaaccagAGAGCGAACCCAATCAGGTGCTGGTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAAATCAGATGGCTTATGATGATTTTTTTGTGTGTATAGCAATTAATCTCATTCCAGCAGTCCTTGATGTCACAACTTGGTCAACAACAAGCTGGCCCgtgagtattccccagttcaacttaacctgtttaagctcatcatgtttatgtataccttttctttttctaagttaattgttgagtgtaaaatcaagagatttttatttgtaagtctcgcctatactactgcttattgaatccttttctttctttctttcttttttgaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG