1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTTTCAGCATTTGAAAGCCTGCCTCAGGTTACCCGTTACAGCGTGTCTGTTCAGCCTTCATGGGAGCATTTTTGCAATTCTGAAATGTCTTCCCACCAGTgtaagtattgatgaaaatattagtgtatatttttcctttctttgttcatctcattagttgcatggtaagcttatcttgcacccacatattgcag
species | Oryza sativa |
transcript | LOC_Os03g03900.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCAGCCTTCATGGGAGCATTTTTGCAATTCTGAAATGTCTTCCCACCAGT AAGCGAAAGGGTTCACAAGAAAGCEST: gi|29644322|gb|CB649329.1|CB649329
genomic: TCAGCCTTCATGGGAGCATTTTTGCAATTCTGAAATGTCTTCCCACCAGTgtaagtattg ... catattgcagAAGCGAAAGGGTTCACAAGAAAGC
EST: TCAGCCTTCATGGGAGCATTTTTGCAATTCTGAAATGTCTTCCCACCAGT AAGCGAAAGGGTTCACAAGAAAGCAGTTGCAGTGCTGGCAATGAAACAAGAEST: gi|29620452|gb|CB625463.1|CB625463
genomic: TCAGCCTTCATGGGAGCATTTTTGCAATTCTGAAATGTCTTCCCACCAGTgtaagtattg ... catattgcagAAGCGAAAGGGTTCACAAGAAAGCAGTTGCAGTGCTGGCAATGAAACAAGA
EST: TCAGCCTTCATGGGAGCATTTTTGCAATTCTGAAATGTCTTCCCACCAGT AAGCGAAAGGGTTCCCAAGAAAGCAGTTGCAGTGCTGGCAATGAAACAAGA
genomic: TCAGCCTTCATGGGAGCATTTTTGCAATTCTGAAATGTCTTCCCACCAGTgtaagtattg ... catattgcagAAGCGAAAGGGTTCACAAGAAAGCAGTTGCAGTGCTGGCAATGAAACAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTCAGCATTTGAAAGCCTGCCTCAGGTTACCCGTTACAGCGTGTCTGTTCAGCCTTCATGGGAGCATTTTTGCAATTCTGAAATGTCTTCCCACCAGTgtaagtattgatgaaaatattagtgtatatttttcctttctttgttcatctcattagttgcatggtaagcttatcttgcacccacatattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA