1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAGgtatcatctctccttttctggtagctgctgattactgcttaaaaaaatattaaggtctgctatcatgttttcctttgaaattaatgacacttctagccaa...
species | Oryza sativa |
transcript | LOC_Os03g03460.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAG ATTAATAGGAGGATGGAGTTTGTGTTTGCAAGTCATACATTTGATGTTTGGEST: gi|88473977|gb|CI411248.1|CI411248
genomic: GATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAGgtatcatctc ... tgtgctgaagATTAATAGGAGGATGGAGTTTGTGTTTGCAAGTCATACATTTGATGTTTGG
EST: CTTCGTCGCTGGTGGTAAACTATTGCAG ATTAATAGGAGGATGGAGTTTGTGTTTGCAATTCATACATTTGATGTTTGGEST: gi|86493313|gb|CI135946.1|CI135946
genomic: CTTCGTCGCTGGTGGTAAACTATTGCAGgtatcatctc ... tgtgctgaagATTAATAGGAGGATGGAGTTTGTGTTTGCAAGTCATACATTTGATGTTTGG
EST: GATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAG ATTAATAGGAGGATGGAGTTTGTGTTTGCAAGTCATACATTTGATGTTTGGEST: gi|33804331|gb|CF328040.1|CF328040
genomic: GATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAGgtatcatctc ... tgtgctgaagATTAATAGGAGGATGGAGTTTGTGTTTGCAAGTCATACATTTGATGTTTGG
EST: GATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAG ATTAATAGGAGGATGGAGTTTGTGTTTGCAAGTCATACATTTGATGTTTGGEST: gi|87031789|gb|CI272490.1|CI272490
genomic: GATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAGgtatcatctc ... tgtgctgaagATTAATAGGAGGATGGAGTTTGTGTTTGCAAGTCATACATTTGATGTTTGG
EST: GATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAG ATTAATAGGAGGATGGAGTTTGTGTTTGCAAGTCATACATTTGATGTTTGGEST: gi|88417707|gb|CI535866.1|CI535866
genomic: GATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAGgtatcatctc ... tgtgctgaagATTAATAGGAGGATGGAGTTTGTGTTTGCAAGTCATACATTTGATGTTTGG
EST: AACTATTGCAG ATTAATAGGAGGATGGAGTTTGTGTTTGCAAGTCATACATTTGATGTTTGGEST: gi|88227952|gb|CI227432.1|CI227432
genomic: AACTATTGCAGgtatcatctc ... tgtgctgaagATTAATAGGAGGATGGAGTTTGTGTTTGCAAGTCATACATTTGATGTTTGG
EST: CATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAG ATTAATAGGAGGATGGAGTTTGTGTTTGCAAGTCATACATTTGATGTTTGGEST: gi|29661381|gb|CB657656.1|CB657656
genomic: CATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAGgtatcatctc ... tgtgctgaagATTAATAGGAGGATGGAGTTTGTGTTTGCAAGTCATACATTTGATGTTTGG
EST: GATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAG ATTAATAGGAGGATGGAGTTTGTGTTTGCAAGTCATACATTTGATGTTTGG
genomic: GATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAGgtatcatctc ... tgtgctgaagATTAATAGGAGGATGGAGTTTGTGTTTGCAAGTCATACATTTGATGTTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATACCATGGGATTACGTTCCTTCGTCGCTGGTGGTAAACTATTGCAGgtatcatctctccttttctggtagctgctgattactgcttaaaaaaatattaaggtctgctatcatgttttcctttgaaattaatgacacttctagccaa
- - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa