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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTCCCGGTGGGGCCCATCGCCAACGTGCCCTACTTCCGGCGGGTCGCCGCCGCCCACCAGgtccggcccggtcgctctccacctaactgcagccgaccacgcatccctgtctctgagcttctcttgccgtggttctgaatttatgtgagctgatccatccttgcctgccattcattcttgcag

Basic information

species Oryza sativa
transcript LOC_Os03g03370.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g03370.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G382534_T01 (Zea mays), 5'ss of exon 4
GGCGTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTCCCGGTGGGGCCCATCGCCAACGTGCCCTACTTCCGGCGGGTCGCCGCCGCCCACCAGgtccggcccggtcgctctccacctaactgcagccgaccacgcatccctgtctctgagcttctcttgccgtggttctgaatttatgtgagctgatccatccttgcctgccattcattcttgcag
||| ||||||||||| ||||||||||| ||||||||||| ||||| || || |||||||  |||||||||||||||||||| |||||||| ||||| ||||||||  |   |     ||  ||  ||  |   |  ||      ||| ||||    || | | |||  ||   |      |  |||  |||| | | | | |||                   
GGCCTACATGTTCGTGCACGACGGCCTCGTCCACCGCCGTTTCCCCGTCGGCCCCATCGAGAACGTGCCCTACTTCCGGCGTGTCGCCGCAGCCCATCAGgtccgatcgccttctcttctgccccacccctatcatcc---tgcccccgtctgcctgcctgtgttgttgtaact----gctgctgtttgctgctgcctgcatgcag-----------------

upper sequence: LOC_Os03g03370.2 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv02s0025g00240.t01 (Vitis vinifera), 5'ss of exon 5
GGCGTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTCCCGGTGGGGCCCATCGCCAACGTGCCCTACTTCCGGCGGGTCGCCGCCGCCCACCAGgtccggcccggtcgctctccacctaactgcagccgaccacgcatccctgtctctgagcttctcttgccgtggttctgaatttatgtgagctgatccatccttgcctgccattcattcttgcag
||| |||||||| |||||||||||||| |||||||| || ||||| || || |||||||||||||| || ||  | ||    || ||  | |||||||| ||    |       | | |||||||   || |   ||||    || |  | | |     | | |  |  |  |   ||| |  |   |  | ||   | ||||  ||    |           
GGCCTACATGTTTGTCCACGACGGCCTTGTCCACCGTCGATTCCCTGTCGGACCCATCGCCAACGTCCCTTATCTACGAAAAGTAGCTTCGGCCCACCAAgtaaatc----atacaccccacctacaagctga-aaccaaaattctcaatttatatcactatttatcaattatcaggaaatattcatatgtaat---ttcttgtatgtggattgcag------

upper sequence: LOC_Os03g03370.2 (Oryza sativa), 5'ss of exon 4
lower sequence: EDO99380 (Chlamydomonas reinhardtii), 5'ss of exon 5
------------------------------------GGCGTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTCCCGGTGGGGCCCATCGCCAACGTGCCCTACTTCCGGCGGGTCGCCGCCGCCCACCAGgtccggcccggtcgctctccacctaactgcagccgaccacgcatccctgtctctgagcttctcttgccgtggttctgaatttatgtgagctgatccatccttgcctgccattcattcttgcag
                                     || ||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||   |   |  | ||||  || |       |  |||  |    ||  |  || |      ||      | |   |  | | ||   ||| ||      |||  ||                                                    
CTTCGGCGCGGGTCTGGGCATCACGCTGTTCGGCATCGCCTACATGTTCTTCCACGACGGCCTGGTGCACCGCCGCTTCCCCGTGGGGCCCATCGCCAACgtgag-tgtgtgtgtcgggg-gctgggctgggctgggtgtgcttgggctgggctgcgt---gctaggctgggctgtgtgtgcttggg-ctgggcggtgtgtgct-tg----------------------------------------------------