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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTCAACATGTGCTCATTGATTTTCCGGGGCTTGCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttagttttacttggatatattttggttttgtcccatgggtgtttttgttctcattggttcatgatggcatttgttag

Basic information

species Oryza sativa
transcript LOC_Os03g02850.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G171469_T02 (Zea mays), 5'ss of exon 4
GTATTTCAACATGTGCTCATTGATTTTCCGGGGCTTGCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttag-ttttacttggata-tattttggttttgtcccatgggtgtttttgttctcattggttcatgatggcatttgttag
 || ||||||| ||||| |||||||| ||||| || || |||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||| | ||  | | | |||||   | || |  ||  || |  ||| ||||||| |  ||| ||   |||| |||
ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttaggtttcagttcaacagttttttgacatggttctgtgaatgctgctgtgctcattgttgtatgctgatgtttgctag

upper sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G426306_T01 (Zea mays), 5'ss of exon 5
GTATTTCAACATGTGCTCATTGATTTTCCGGGGCTTGCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgt---tagtttta-cttggatatattttggttttgtcccatgggtgtttttgttctcattggttcatgatggcatttgttag
 || | |||||||||||  | ||| | || ||||||||||||||||| || ||||| || |||||||||||||||||||||||||| ||||||||   |  ||||| ||  | || |  |   | ||||    |   |||| |||| |   ||  ||  || |    ||   |||
ATAATACAACATGTGCTTCTGGATATGCCCGGGCTTGCATTCTTCACGACATATGCACTTTTAGTGCTCTTCTGGGCTGAGATTTATTATCAGgtatttccttttatctctgttagacctc--tattgttttgtcaatgttgttgtgcctcttaatttttgttcctgttctctag

upper sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G055462_T01 (Zea mays), 5'ss of exon 5
-----GTATTTCAACATGTGCTCATTGATTTTCCGGGGCTT--GCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttagttttacttggatatattttggtt---ttgtcccatgggtgtttttgttctcattggttcatgatggcatttgttag
      || | |||||||||||  | ||| | || ||||||  ||||||||||| || ||||| || |||||||||||||||||||||||||| ||||| || | || |  |||  | | ||     |   ||||    |   |||| |||| |   ||  ||  || |    ||   |||
CTCAGATAATACAACATGTGCTTCTGGATATGCCCGGGCTTTTGCATTCTTCACGACATATGCACTTTTAGTGCTCTTCTGGGCTGAGATTTATTATCAAgt-atttctttttgtctctgttggacctctattgttttgtcaatgttgttgtgcctcttaatttttgttcctgttctctag

upper sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA07G28990.1 (Glycine max), 5'ss of exon 4
GTATTTCAACATGTGCTCATTGATTTTCCGGGGCTTGCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttagttttacttg-gatatattt---------tggtt---ttgtcccatg-ggtgtttttgttctcattggttcatgatggcatttgttag-----------------------------------------
 |  |||||||  |  |  ||||  | ||| | ||||| ||||| ||||| ||||| || || || || ||||||||||||||||| |||||||  ||||| | ||| | |  ||||         |||||   ||| | | || | | || || |||    | ||   |  ||    ||| |                                           
ATTGTTCAACACATCTTGCTTGACGTGCCGAGTCTTGCTTTCTTTACAACATATGCACTTTTGGTCCTGTTCTGGGCTGAGATTTATTATCAGgcaagtttgatttgtggtgcatttgcttctacatggttggtttgcctcctgtgattttcttcttccaggtagtgtgttttgctgattggttttgatgggctgattactgcctcggtgttaaatgctttttcag

upper sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA05G26630.2 (Glycine max), 5'ss of exon 4
GTATTTCAACATGTGCTCATTGATTTTCCGGGGCTTGCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttagttttacttg-gatatattttggttttgtcccat-------------gggtgtttttgttctcattggttcatgatggcatt--tgttag----------------
 |  | |||||| |  |  ||||  | ||  | ||||| ||||| ||||| ||||| ||||| || || ||||||||||||||||| || ||||  ||||  | | | | |  |||||   | | |  | |             || ||||  | || |  | |  | || ||| | ||  || ||                 
ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaattcgtggtgcatttttactgtttttctttttaattagcttgggatgttgctattttggtggcctgattatgactttgatgctacgttacctgtttggcag

upper sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA08G09640.1 (Glycine max), 5'ss of exon 4
GTATTTCAACATGTGCTCATTGATTTTCCGGGGCTTGCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttagttttacttg-gatatat-----tttggt-tttgtcccatgggtgtttttgttctcattggt-tcatgatggcat--ttgttag------------------------------
 |  | |||||| |  |  ||||  | ||  | ||||| ||||| ||||| ||||| ||||| || || ||||||||||||||||| || ||||  ||||     || | |||||     |||  | ||| ||   |   ||  | ||   | |||| | |  || |||| |  || | ||                              
ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCGCTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttcattctgtggtatatgtacatttactatttttctttttaatgagtatgggat-attgctattttggtggcctgattatgagtttatgactttgatgctacatgttttgcag

upper sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 4
lower sequence: AT2G02180.1 (Arabidopsis thaliana), 5'ss of exon 4
GTATTTCAACATGTGCTCATTGATTTTCCGGGGCTTGCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttagttttacttggatatattttggttttgtcccatgg----gtgtttttgttctcattggttcatgatggcatttgttag---------
 |  | |||||| |  |  ||||| ||||  | ||||| |||||||| |||||||||||  | || || ||||||||||| ||||| |||||||| |||||    ||  ||| | | |||||  |    ||     |  | |||| | |   |  || |   |  || |  || |         
ATTCTGCAACATATCTTGCTTGATATTCCAAGTCTTGCTTTCTTCACCACCTATGCTCTTCTGGTTCTTTTCTGGGCTGAAATTTATTATCAGgt-agtttctaatgagtatctatgggtttctttttttgtcaatgcttctttggttttgatattttact-taacactcttttgattggacag

upper sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv01s0010g01740.t01 (Vitis vinifera), 5'ss of exon 4
GTATTTCAACATGTGCTCATTGATTTTCCGGGGCTTGCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttagttttacttggatatattttggttttgtcccatgggtgtttttgttctcattggttcatgatggcatttgttag---------
 |  | |||||| |  |  ||||| | ||  | ||||| |||||||||||||||||||| || ||  | |||||||| || || ||||||||||||||   ||  |  ||   | ||  | ||      ||  ||||| | || | ||| |||| |      ||||  |           
ATTATCCAACATATCTTACTTGATATGCCAAGTCTTGCTTTCTTCACAACCTATGCTCTTTTGGTATTGTTCTGGGCAGAAATATACTATCAGgttaggcataactt-atgggtcttactctt-----ttgtatgtttgtattgttattagttcgtctcattattttctcaacatgacag