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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATACCTGAATTAAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgcccttccaactcttgttgcatagcatttgtgcaaagcatcacatatctgtagaattaagctattatattttcactcccacttaccagcagcttgg...

Basic information

species Oryza sativa
transcript LOC_Os02g58730.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g58730.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G375002_T03 (Zea mays), 5'ss of exon 4
TGGATACCTGAATTAAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgcccttccaactcttgttgcatagcatttgtgcaaagcatcacatatctgtagaattaagctattatatt--ttcactcccacttac--cagcagcttgg---
||| | |||||||||||||| ||||||||||| ||||| ||||| || ||||| ||||| |||||||||| ||||  | ||||      || |     ||||    || |  |  ||  ||||||   || | ||  |  |||  | ||| ||||     ||   |     
TGGGTTCCTGAATTAAGGCACTATGCTCCTGGCGTGCCCATAATCCTTGTTGGGACAAAACTTGgtatgctcttc--attcttcacctctatc-----tgcagcatattatgttcctccagaattggcctttcattctcattcgttgccagttacattgccaaaattatct

upper sequence: LOC_Os02g58730.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G375002_T02 (Zea mays), 5'ss of exon 3
------------------------------------TGGATACCTGAATTAAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgcccttccaactcttgttgcatagcatttgtgcaaagcatcacatatctgtagaattaagctattatatt--ttcactcccacttac--cagcagcttgg---
                                    ||| | |||||||||||||| ||||||||||| ||||| ||||| || ||||| ||||| |||||||||| ||||  | ||||      || |     ||||    || |  |  ||  ||||||   || | ||  |  |||  | ||| ||||     ||   |     
TTCTTGCATATTACCTGTGCATGTCGTTTTTTCCAGTGGGTTCCTGAATTAAGGCACTATGCTCCTGGCGTGCCCATAATCCTTGTTGGGACAAAACTTGgtatgctcttc--attcttcacctctatc-----tgcagcatattatgttcctccagaattggcctttcattctcattcgttgccagttacattgccaaaattatct

upper sequence: LOC_Os02g58730.2 (Oryza sativa), 5'ss of exon 4
lower sequence: AT4G35020.3 (Arabidopsis thaliana), 5'ss of exon 6
TGGATACCTGAATTAAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgcccttccaactcttgttgcatag-catttg--tgcaaagcatcacatatct-gtagaattaagctattatattttcactcccacttacca-gcagcttgg
||| | |||||| | || ||||||||||||||||| || || || |||||||||||||||||||||  |   || |    ||     | ||  |   ||  |     |  |    | | | |  ||| |    | | ||||||| |   |    |  |   |||     
TGGGTTCCTGAACTGAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAAAGCTTGgttggttttttcttagctcaactcttaatcgcctgattatcgggggttttctgttttggggaactc--ttctgatattttgatgactgagtctcgtacag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218483315|gb|FG958115.1|FG958115
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|30228239|gb|CB966130.1|CB966130
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCNATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|11233552|gb|AU164964.1|AU164964
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|58593555|gb|CF991863.1|CF991863
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|163918056|gb|EG713984.1|EG713984
EST:     TCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: TCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|88832933|gb|CI369823.1|CI369823
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|86861523|gb|CI328204.1|CI328204
EST:     CGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCCTGGTGCTGTACCT
genomic: CGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCA-CCCTGGTGCTGTACCT
EST: gi|25807453|gb|CA763414.1|CA763414
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|30229558|gb|CB967449.1|CB967449
EST:     AAGGCATTATGCTCCTGGTGTGCCNATAATTCTCGTTGGAACNAAGCTTG                         ATCTGCGGGATGATAAGCNATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|117226289|gb|CT846197.1|CT846197
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTTGTAGATCACCCTGGTGCTGTACCTA
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|32947879|gb|BP184451.1|BP184451
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|163920990|gb|EG710403.1|EG710403
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGAT
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGAT
EST: gi|33802327|gb|CF327037.1|CF327037
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|86415824|gb|CI029835.1|CI029835
EST:     AAGGCATTATGCTCCTGGTGTGCCCATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCNATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|218499440|gb|FG950955.1|FG950955
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAAATCACCCTGGTGCTGTACCTA
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|218494722|gb|FG969779.1|FG969779
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|163929342|gb|EG713767.1|EG713767
EST:     GTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: GTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|7134822|gb|AU082691.1|AU082691
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|25802725|gb|CA758686.1|CA758686
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCCTG                         ATCTGCGGGATGATTAAGCAATTTTT-GTAGATCACCCTGGTGCTGTACCT
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGAT-AAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCT
EST: gi|58591734|gb|CF990042.1|CF990042
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGG
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGG
EST: gi|86599058|gb|CI355675.1|CI355675
EST:     GGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: GGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|3763167|gb|AU029919.1|AU029919
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|2431385|gb|C73805.1|C73805
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|14980894|gb|BI305572.1|BI305572
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|88251317|gb|CI349745.1|CI349745
EST:     TGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACACTGGTGCTGTACCTA
genomic: TGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|58594206|gb|CF992514.1|CF992514
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|33802329|gb|CF327038.1|CF327038
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCCTGGTGCTGTACCT
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCA-CCCTGGTGCTGTACCT
EST: gi|7134824|gb|AU082692.1|AU082692
EST:     AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTG                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: AAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
EST: gi|86598350|gb|CI354967.1|CI354967
EST:     ATAATTCTAGTT-GAACAAAGCTTA                         ATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA
genomic: ATAATTCTCGTTGGAACAAAGCTTGgtatgccctt ... ctgttaatagATCTGCGGGATGATAAGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTA