1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatcttgattgtatacatccagctatttcttcttctgtttgttaagatgatcaatgatcatcttatcacttatccaggtcttataaaatgagaat...
species | Oryza sativa |
transcript | LOC_Os02g57854.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTEST: gi|88242157|gb|CI242006.1|CI242006
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGTTAGCTACAACAGGCCCGTTCCTEST: gi|88477930|gb|CI415201.1|CI415201
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTEST: gi|88353826|gb|CI634617.1|CI634617
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTEST: gi|88334071|gb|CI641122.1|CI641122
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGEST: gi|86523723|gb|CI163929.1|CI163929
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCG
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTEST: gi|112785856|gb|EE591550.1|EE591550
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCACCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTEST: gi|88363322|gb|CI643180.1|CI643180
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTEST: gi|88310002|gb|CI657426.1|CI657426
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTEST: gi|88490588|gb|CI427860.1|CI427860
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTEST: gi|88505127|gb|CI432633.1|CI432633
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTEST: gi|88339191|gb|CI633762.1|CI633762
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTEST: gi|88242883|gb|CI240734.1|CI240734
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTEST: gi|88216147|gb|CI215996.1|CI215996
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTEST: gi|55433572|gb|CV729894.1|CV729894
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTEST: gi|88979436|gb|CI025938.1|CI025938
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTEST: gi|88475489|gb|CI412760.1|CI412760
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: CAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTEST: gi|86910935|gb|CI294835.1|CI294835
genomic: CAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGEST: gi|86529211|gb|CI169417.1|CI169417
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTG
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTEST: gi|3761016|gb|C98270.1|C98270
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTEST: gi|86593735|gb|CI266415.1|CI266415
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: AATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTEST: gi|88333055|gb|CI640898.1|CI640898
genomic: AATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGEST: gi|88261929|gb|CI365505.1|CI365505
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTG
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTCCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTEST: gi|88282577|gb|CI403973.1|CI403973
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
EST: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT GTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
genomic: AGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatct ... catttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATgtaagtatcttgattgtatacatccagctatttcttcttctgtttgttaagatgatcaatgatcatcttatcacttatccaggtcttataaaatgagaat
- - - - - - - - - - - - - - - - - - - - - - - - GGAGGA