1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGCGACCGAAATGAAACAGATTTGGACATAAATATACCTGCAGTTCTTCTGCCAAAAGATGCAGGCAATGATTTACAGAAGCTTCTTACACGTGGTAAAGgtaaatcttcaaagccttccaccacctgaaatcttgtgccatgtcctatgtaggttttttttttgtttcaaattttgttttgtcttggaagttgttttttggccatagtatctaacatatgtatcgaatttgttttcaatttctcag
species | Oryza sativa |
transcript | LOC_Os02g57710.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCCAAAAGATGCAGGCAATGATTTACAGAAGCTTCTTACACGTGGTAAAG TTTCGGTGCAGCTATACTCTCCAGACCGTCCTCTGGTTGATACTGCAGAGGEST: gi|29627307|gb|CB632318.1|CB632318
genomic: GCCAAAAGATGCAGGCAATGATTTACAGAAGCTTCTTACACGTGGTAAAGgtaaatcttc ... aatttctcagTTTCGGTGCAGCTATACTCTCCAGACCGTCCTCTGGTTGATACTGCAGAGG
EST: GCCAAAAGATGCAGGCAATGATTTACAGAAGCTTCTTACACGCGGGAAAG TTTCGGTGCAGCTATACTCTCCAGACCGTCCTCTGGTTGATACTEST: gi|29677466|gb|CB673741.1|CB673741
genomic: GCCAAAAGATGCAGGCAATGATTTACAGAAGCTTCTTACACGTGGTAAAGgtaaatcttc ... aatttctcagTTTCGGTGCAGCTATACTCTCCAGACCGTCCTCTGGTTGATACT
EST: GCCAAAAGATGCAGGCAATGATTTACAGAAGCTTCTTACACGTGGTAAAG TTTCGGTGCAGCTATACTCTCCAGACCGTCCTCTGGTTGATACTGCAGAGGEST: gi|29613254|gb|CB618267.1|CB618267
genomic: GCCAAAAGATGCAGGCAATGATTTACAGAAGCTTCTTACACGTGGTAAAGgtaaatcttc ... aatttctcagTTTCGGTGCAGCTATACTCTCCAGACCGTCCTCTGGTTGATACTGCAGAGG
EST: GCCAAAAGATGCAGGCAATGATTTACAGAAGCTTCTTACACGTGGTAAAG TTTCGGTGCAGCTATACTCTCCAGACCGTCCTCTGGTTGATACTGCAGAGGEST: gi|29623066|gb|CB628077.1|CB628077
genomic: GCCAAAAGATGCAGGCAATGATTTACAGAAGCTTCTTACACGTGGTAAAGgtaaatcttc ... aatttctcagTTTCGGTGCAGCTATACTCTCCAGACCGTCCTCTGGTTGATACTGCAGAGG
EST: GCCAAAAGATGCAGGCAATGATTTACAGAAGCTTCTTACACGTGGTAAAG TTTCGGTGCAGCTATACTCTCCAGACCGTCCTCTGGTTGATACTGCAGAGG
genomic: GCCAAAAGATGCAGGCAATGATTTACAGAAGCTTCTTACACGTGGTAAAGgtaaatcttc ... aatttctcagTTTCGGTGCAGCTATACTCTCCAGACCGTCCTCTGGTTGATACTGCAGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCGACCGAAATGAAACAGATTTGGACATAAATATACCTGCAGTTCTTCTGCCAAAAGATGCAGGCAATGATTTACAGAAGCTTCTTACACGTGGTAAAGgtaaatcttcaaagccttccaccacctgaaatcttgtgccatgtcctatgtaggttttttttttgtttcaaattttgttttgtcttggaagttgttttttggccatagtatctaacatatgtatcgaatttgttttcaatttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC