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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGCGAGTATGAAACAAGAAACTATGGATTTGACGAAGTAAATCATCATATGGCTGAACAACTTGCAATGgtatgcattgtgcgcacatccgcttttcttccaactatatagataattcctaatacaatctttgagaattaggattgaatgaaattcaaagtagcaacca...

Basic information

species Oryza sativa
transcript LOC_Os02g57180.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g57180.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G143651_T01 (Zea mays), 5'ss of exon 6
GACGCGAGTATGAAACAAGAAACTATGGATTTGACGAAGTAAATCATCATATGGCTGAACAACTTGCAATGgtatgcattgtgcgc---acatccgcttttcttccaactatatagataattcctaatacaatctttgagaattaggattgaatgaaattcaaagtagcaacca
|||| |||||||||||||| |||||  | || || |||||||| || |||||| ||||||| |||||||  |||||   ||| |     || |||  ||      |  |||| || |||  |  | |     | | ||  ||  || | |   | |     ||  ||       
GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctgtccattttacttcctgttgcagatctgctatctaaata--tgttgactttttttctggaaaggagaagtatgtaagcagtaagctatttctt-

upper sequence: LOC_Os02g57180.2 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv07s0005g04440.t01 (Vitis vinifera), 5'ss of exon 6
GACGCGAGTATGAAACAAGAAACTATGGATTTGACGAAGTAAATCATCATATGGCTGAACAACTTGCAATGgtatgcattgtgcgcacatccgcttttcttccaactatatagataattcctaatacaatctttgagaattagga--ttgaatgaaattcaaagtagcaacca-
|| | || ||||| |||||||| ||| | ||||| ||||| || |||||||||||||| || ||||| |||||| |   |    |||  | |  |     ||  | |||   | | | | || | |   | | ||    ||   |  ||   |    ||  ||     |     
GAAGGGAATATGAGACAAGAAATTATAGCTTTGAGGAAGTGAACCATCATATGGCTGAGCAGCTTGCTATGgtagg---tccctgcatgtgctttaactgtcttattattccgttgaatgctgagatgttttctggatgttgatacctttgttactcttgcaacccatattttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58690755|gb|CK079442.1|CK079442
EST:     ACTATGGATTTGACGAAGTAAATCATCATATGGCTGAACAACTTGCAATG                         ATTTCAAAGGAGCATGGGGGTATCATGAGATTTATCCATGTTTCTTCCCTA
genomic: ACTATGGATTTGACGAAGTAAATCATCATATGGCTGAACAACTTGCAATGgtatgcattg ... ctatgcacagATTTCAAAGGAGCATGGGGGTATCATGAGATTTATCCAGGTTTCTTCCCTA
EST: gi|58597371|gb|CK007899.1|CK007899
EST:     ACTATGGATTTGACGAAGTAAATCATCATATGGCTGAACAACTTGCAATG                         ATTTCAAAGGAGCATGGGGGTATCATGAGATTTATCCATGTTTCTTCCCTA
genomic: ACTATGGATTTGACGAAGTAAATCATCATATGGCTGAACAACTTGCAATGgtatgcattg ... ctatgcacagATTTCAAAGGAGCATGGGGGTATCATGAGATTTATCCAGGTTTCTTCCCTA
EST: gi|29639479|gb|CB644488.1|CB644488
EST:     ACTATGGATTTGACGAAGTAAATCATCATATGGCTGAACAACTTGCAATG                         ATTTCAAAGGAGCATGGGGGTATCATGAGATTTATCCAGGTTTCTTCCCTA
genomic: ACTATGGATTTGACGAAGTAAATCATCATATGGCTGAACAACTTGCAATGgtatgcattg ... ctatgcacagATTTCAAAGGAGCATGGGGGTATCATGAGATTTATCCAGGTTTCTTCCCTA