1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAAAGATGGGGTCTCAAGTGCTTGTACCATTCAGAGGTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAGgtactgtatttttgtagttcacaaattacaagtagtgaagtcattaactcatttttcctttttttttcccttttatgtattctacttttttctcttggcag
species | Oryza sativa |
transcript | LOC_Os02g57180.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAG ATTGTTCCTATGAAATACAATCCAAGAGATGTGGATTCAATTAAGGCTGTCEST: gi|58690755|gb|CK079442.1|CK079442
genomic: GTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAGgtactgtatt ... ctcttggcagATTGTTCCTATGAAATACAATCCAAGAGATGTGGATTCAATTAAGGCTGTC
EST: GTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAG ATTGTTCCTATGAAATACAATCCAAGAGATGTGGATTCAATTAAGGCTGTCEST: gi|38565625|gb|CK085078.1|CK085078
genomic: GTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAGgtactgtatt ... ctcttggcagATTGTTCCTATGAAATACAATCCAAGAGATGTGGATTCAATTAAGGCTGTC
EST: GTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAG ATTGTTCCTATGAAATACAACCCAAGAGATGTGGATTCAATTAAGGCTGTCEST: gi|29673108|gb|CB669383.1|CB669383
genomic: GTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAGgtactgtatt ... ctcttggcagATTGTTCCTATGAAATACAATCCAAGAGATGTGGATTCAATTAAGGCTGTC
EST: GTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAG ATTGTTCCTATGAAATACAATCCAAGAGATGTGGATTCAATTAAGGCTGTCEST: gi|29671358|gb|CB667633.1|CB667633
genomic: GTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAGgtactgtatt ... ctcttggcagATTGTTCCTATGAAATACAATCCAAGAGATGTGGATTCAATTAAGGCTGTC
EST: GTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAG ATTGTTCCTATGAAATACAATCCAAGAGATGTGGATTCAATTAAGGCTGTCEST: gi|58663529|gb|CK052215.1|CK052215
genomic: GTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAGgtactgtatt ... ctcttggcagATTGTTCCTATGAAATACAATCCAAGAGATGTGGATTCAATTAAGGCTGTC
EST: TTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTTGACCTGGGTCAG ATTGTTCCTATGAAATACAATCCAAGAGATGTGGATTCAATTAAGGCTGTCEST: gi|58597371|gb|CK007899.1|CK007899
genomic: TTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGT-GACCTGGGTCAGgtactgtatt ... ctcttggcagATTGTTCCTATGAAATACAATCCAAGAGATGTGGATTCAATTAAGGCTGTC
EST: GTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAG ATTGTTCCTATGAAATACAATCCAAGAGATGTGGATTCAATTAAGGCTGTCEST: gi|33657303|gb|CF279917.1|CF279917
genomic: GTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAGgtactgtatt ... ctcttggcagATTGTTCCTATGAAATACAATCCAAGAGATGTGGATTCAATTAAGGCTGTC
EST: GTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAG ATTGTTCCTATGAAATACAATCCAAGAGATGTGGATTCAATTAAGGCTGTCEST: gi|58652884|gb|CK041564.1|CK041564
genomic: GTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAGgtactgtatt ... ctcttggcagATTGTTCCTATGAAATACAATCCAAGAGATGTGGATTCAATTAAGGCTGTC
EST: GTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAG ATTGTTCCTATGAAATACAATCCAAGAGATGTGGATTCAATTAAGGCTGTC
genomic: GTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAGgtactgtatt ... ctcttggcagATTGTTCCTATGAAATACAATCCAAGAGATGTGGATTCAATTAAGGCTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAGATGGGGTCTCAAGTGCTTGTACCATTCAGAGGTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAGgtactgtatttttgtagttcacaaattacaagtagtgaagtcattaactcatttttcctttttttttcccttttatgtattctacttttttctcttggcag
- - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG