1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTAGTTTCCCTTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctcccttttttcgtccttattgtcattgtctgttcccttgttgtagatattttgaaacatcagataccggaactgattgctttagttgacttc...
species | Oryza sativa |
transcript | LOC_Os02g53060.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88271757|gb|CI387810.1|CI387810
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCAGCCCTGGAGACAAACTACAEST: gi|88503126|gb|CI430632.1|CI430632
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCA-CCCTGGAGACAAACTACA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|11233281|gb|AU164713.1|AU164713
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88551157|gb|CI481189.1|CI481189
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88320707|gb|CI525649.1|CI525649
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACCCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88671264|gb|CI723184.1|CI723184
genomic: TGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|163920296|gb|EG710592.1|EG710592
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTEST: gi|88318949|gb|CI510744.1|CI510744
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCT
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCAGCCCTGGAGACAAACTACAEST: gi|88677292|gb|CI729950.1|CI729950
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCA-CCCTGGAGACAAACTACA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88379765|gb|CI503964.1|CI503964
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|3761046|gb|C98300.1|C98300
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TGCTATAGCCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAAACGCAGATGGTGTTTCCGAGGAAATTTCACCCTGGAGACAAACTAC
genomic: TGCTATAG-CCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagAT-AAACGCAGATGGTGTTT-CGAGGAAATTTCACCCTGGAGACAAACTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGTTTCCCTTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctcccttttttcgtccttattgtcattgtctgttcccttgttgtagatattttgaaacatcagataccggaactgattgctttagttgacttc
- - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - TGGAGG