1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGgtaagtacaagaattttgctccgaaatgaagcatccaaacaatttacctgagcaagtccatggttgtctgctttaactacaactactgacattctgaatcttggcag
species | Oryza sativa |
transcript | LOC_Os02g52650.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGG CTNCCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAEST: gi|88517755|gb|CI445409.1|CI445409
genomic: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGgtaagtacaa ... atcttggcagCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGA
EST: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGG CTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAEST: gi|313084028|gb|HO213811.1|HO213811
genomic: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGgtaagtacaa ... atcttggcagCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGA
EST: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGG CTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAEST: gi|38475135|gb|CF959268.1|CF959268
genomic: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGgtaagtacaa ... atcttggcagCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGA
EST: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGG CTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAEST: gi|88988697|gb|CI039116.1|CI039116
genomic: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGgtaagtacaa ... atcttggcagCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGA
EST: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGG CTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAEST: gi|86859982|gb|CI321951.1|CI321951
genomic: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGgtaagtacaa ... atcttggcagCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGA
EST: GAA-GAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGG CTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAEST: gi|88508359|gb|CI435865.1|CI435865
genomic: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGgtaagtacaa ... atcttggcagCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGA
EST: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGG CTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAEST: gi|88847374|gb|CI011317.1|CI011317
genomic: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGgtaagtacaa ... atcttggcagCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGA
EST: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGG CTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAEST: gi|88511781|gb|CI439287.1|CI439287
genomic: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGgtaagtacaa ... atcttggcagCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGA
EST: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGG CTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAEST: gi|88475902|gb|CI413173.1|CI413173
genomic: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGgtaagtacaa ... atcttggcagCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGA
EST: TTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGG CTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAEST: gi|88486332|gb|CI423603.1|CI423603
genomic: TTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGgtaagtacaa ... atcttggcagCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGA
EST: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGG CTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAEST: gi|88282945|gb|CI404193.1|CI404193
genomic: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGgtaagtacaa ... atcttggcagCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGA
EST: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGG CTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAEST: gi|86521070|gb|CI161276.1|CI161276
genomic: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGgtaagtacaa ... atcttggcagCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGA
EST: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGG CTACNCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAEST: gi|88471088|gb|CI408359.1|CI408359
genomic: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGgtaagtacaa ... atcttggcagCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGA
EST: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGG CTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAEST: gi|33683440|gb|CF311679.1|CF311679
genomic: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGgtaagtacaa ... atcttggcagCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGA
EST: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGG CTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGA
genomic: GAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGgtaagtacaa ... atcttggcagCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGgtaagtacaagaattttgctccgaaatgaagcatccaaacaatttacctgagcaagtccatggttgtctgctttaactacaactactgacattctgaatcttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA