1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTGGGTGAGTTGGCCGGGTTGGCGGTTGGTTCCGCGGTTTGCATTACGTCCATCTTCGCAGGgtaaatacgctagaaatcgacggcccgttaatcaatcagctattcaattcgttcattcatgttcatgaccaagaagattagtactagctaattaggaagt...
species | Oryza sativa |
transcript | LOC_Os02g51110.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCATTACGTCCATCTTCGCAGG GTCAATTTCAGGTGGATCGATGAACCCGGCAAGGACGCTGGGGCCGGCGCTEST: gi|58606995|gb|CK035028.1|CK035028
genomic: GCATTACGTCCATCTTCGCAGGgtaaatacgc ... gtggttgcagGGCAATTTCAGGTGGATCGATGAACCCGGCAAGGACGCTGGGGCCGGCGCT
EST: GCCGGGTTGGCGGTTGGTTCCGCGGTTTGCATTACGTCCATCTTCGCAGG GGCAATTTCAGGTGGATCGATGAACCCGGCAAGGACGCTGGGGCCGGCGCTEST: gi|44672909|gb|CR286343.1|CR286343
genomic: GCCGGGTTGGCGGTTGGTTCCGCGGTTTGCATTACGTCCATCTTCGCAGGgtaaatacgc ... gtggttgcagGGCAATTTCAGGTGGATCGATGAACCCGGCAAGGACGCTGGGGCCGGCGCT
EST: CCGGGTTGGCNGGTTGGGT-CGCGGTTTGCATTACGTCCATCTTCGCAGG GGCAATTTCAGGTGGATCGATGAACCCGGCAAGGACGCTGGGGCCGGCGCTEST: gi|10518582|gb|AF268096.1|AF268096
genomic: CCGGGTTGGC-GGTTGGTTCCGCGGTTTGCATTACGTCCATCTTCGCAGGgtaaatacgc ... gtggttgcagGGCAATTTCAGGTGGATCGATGAACCCGGCAAGGACGCTGGGGCCGGCGCT
EST: GCATTACGTCCATCTTCGCAGG GGCAATTTCAGGTGGATCGATGAACCCGGCAAGGACGCTGGGGCCGGCGCTEST: gi|87035487|gb|CI190109.1|CI190109
genomic: GCATTACGTCCATCTTCGCAGGgtaaatacgc ... gtggttgcagGGCAATTTCAGGTGGATCGATGAACCCGGCAAGGACGCTGGGGCCGGCGCT
EST: NCCGGGTTGGCGGTTGGTTCCGCGGTTTGCATTACGTCCATCTTCGCAGG GGCAATTTCAGGTGGATCGATGAACCCGGCAAGGACGCTGGGGCCGGCGCT
genomic: GCCGGGTTGGCGGTTGGTTCCGCGGTTTGCATTACGTCCATCTTCGCAGGgtaaatacgc ... gtggttgcagGGCAATTTCAGGTGGATCGATGAACCCGGCAAGGACGCTGGGGCCGGCGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGTGAGTTGGCCGGGTTGGCGGTTGGTTCCGCGGTTTGCATTACGTCCATCTTCGCAGGgtaaatacgctagaaatcgacggcccgttaatcaatcagctattcaattcgttcattcatgttcatgaccaagaagattagtactagctaattaggaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgacggc