1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCTGCGAAGAGTGCATGCAGCCCAAAAAGATGATGATATGCCACCTATTGAAGCTATTCTTGCTCCACTTGAAGCTGAACTAAAGCTTGCTCGTCAAGAGgtaatactgtgttactcaaatggccaggcatggccatattttattgttcattttgtttggtgttgatattacaatattttctcacacttatttagattttgcctcttgcttccatagtcctaattcaacttctccattccaccacatgcatgttcactataattgtctaaagaataagatttgctttttttcttcag
species | Oryza sativa |
transcript | LOC_Os02g50320.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTGCTCGTCAAGAG ACTGCAAAGCTCCAGGATGACAACAGAGCTTTAGATCGTCTAACAAAACAAEST: gi|29636308|gb|CB641317.1|CB641317
genomic: CTTGCTCGTCAAGAGgtaatactgt ... ttttcttcagATTGCAAAACTCCAGGATGACAACAGAGCTTTAGATCGTCTAACAAAACAA
EST: AAGCTATTCTTGCTCCACTTGAAGCTGAACTAAAGCTTGCTCGTCAAGAG ATTGCAAAACTCCAGGATGACAACAGAGCTTTAGATCGTCTAACAAAACAA
genomic: AAGCTATTCTTGCTCCACTTGAAGCTGAACTAAAGCTTGCTCGTCAAGAGgtaatactgt ... ttttcttcagATTGCAAAACTCCAGGATGACAACAGAGCTTTAGATCGTCTAACAAAACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGCGAAGAGTGCATGCAGCCCAAAAAGATGATGATATGCCACCTATTGAAGCTATTCTTGCTCCACTTGAAGCTGAACTAAAGCTTGCTCGTCAAGAGgtaatactgtgttactcaaatggccaggcatggccatattttattgttcattttgtttggtgttgatattacaatattttctcacacttatttagattttgcctcttgcttccatagtcctaattcaacttctccattccaccacatgcatgttcactataattgtctaaagaataagatttgctttttttcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA