1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAGGACGAGTACTTCCAGTCGTTCCGTGTCAACGCCGACAACTTCATGTGCAGCCTCCTCCCGGGCATCTCTAATCACCCCCAGATCCAGTACTCCCCAGgttaatcaatctctctatcaccatctctctctctctctctcttttctcagctagaaccgcagctcttaaatttgttgtgttggcattgcaatgcag
species | Oryza sativa |
transcript | LOC_Os02g50040.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTACTCCCCAG GTGGGCTGCTGTTCAAGGTTGGGGGCAGCAACATGCAGCACGTGACATCGCEST: gi|58657875|gb|CK046555.1|CK046555
genomic: GTACTCCCCAGgttaatcaat ... tgcaatgcagGTGGGCTGCTGTTCAAGGTTGGGGGCAGCAACATGCAGCACGTGACATCGC
EST: CAGNCTCCTCCCGGGCATCTCTAATCAACCCCAGATCCAGTACTCCCCAG GTGGGCTGCTGTTCAEST: gi|66916995|gb|CX103843.1|CX103843
genomic: CAGCCTCCTCCCGGGCATCTCTAATCACCCCCAGATCCAGTACTCCCCAGgttaatcaat ... tgcaatgcagGTGGGCTGCTGTTCA
EST: CAGCCTCCTCCCGGGCATCTCTAATCACCCCCAGATCCAGTACTCCCCAG GTGGGCTGCTGTTCAAGGTTGGGGGCAGCAACATGCAGCACGTGACATCGC
genomic: CAGCCTCCTCCCGGGCATCTCTAATCACCCCCAGATCCAGTACTCCCCAGgttaatcaat ... tgcaatgcagGTGGGCTGCTGTTCAAGGTTGGGGGCAGCAACATGCAGCACGTGACATCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGACGAGTACTTCCAGTCGTTCCGTGTCAACGCCGACAACTTCATGTGCAGCCTCCTCCCGGGCATCTCTAATCACCCCCAGATCCAGTACTCCCCAGgttaatcaatctctctatcaccatctctctctctctctctcttttctcagctagaaccgcagctcttaaatttgttgtgttggcattgcaatgcag
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