1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCACAAAGGGGAATGTTACGATTAAACTTTGGGATCTTGGAGGGCAACGGAGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcctgcacacttaagctatctgttatgcactgtatttaattctcaggatgattaaattgggggaagacacaatacataacctttatgacaacag...
species | Oryza sativa |
transcript | LOC_Os02g49980.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAEST: gi|8324374|gb|AU091530.1|AU091530
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAEST: gi|33817712|gb|CF334689.1|CF334689
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAEST: gi|88342916|gb|CI640249.1|CI640249
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATEST: gi|88575977|gb|CI670122.1|CI670122
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGAT
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATACCATTCCGATAGCTAAAAGTGAEST: gi|33808162|gb|CF329970.1|CF329970
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAEST: gi|88345402|gb|CI656060.1|CI656060
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCAEST: gi|33817714|gb|CF334690.1|CF334690
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAEST: gi|86600191|gb|CI251561.1|CI251561
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAEST: gi|55442549|gb|CV734564.1|CV734564
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAEST: gi|66923097|gb|CX109945.1|CX109945
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAEST: gi|86601190|gb|CI251570.1|CI251570
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAEST: gi|58665641|gb|CK054327.1|CK054327
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAEST: gi|88347247|gb|CI632532.1|CI632532
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCEST: gi|33818441|gb|CF335055.1|CF335055
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACC
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAEST: gi|58586064|gb|CF984372.1|CF984372
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAEST: gi|55414064|gb|CV726440.1|CV726440
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACAAAGGGGAATGTTACGATTAAACTTTGGGATCTTGGAGGGCAACGGAGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcctgcacacttaagctatctgttatgcactgtatttaattctcaggatgattaaattgggggaagacacaatacataacctttatgacaacag
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