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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATACTACAGGTGGTATAGAAGCCAGGGATTCTGGTAAAATTCCTGAACAGCATGCGCTACTCGCAGAATCAAAGAGgtcagtgttctcatagctcttctttttctgcttattttttcaactagtgatttagtacttactggtggaaggtcagctttaatcgtatagcgcatgtttt...

Basic information

species Oryza sativa
transcript LOC_Os02g47440.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|313084008|gb|HO213791.1|HO213791
EST:     GATTCTGGTAAAATTCCTGAACAGCATGCGCTACTCGCAGAATCAAAGAG                         GCAAGAGGTGCTGCAATTGGATAATGAAATTGTTTTCAATGAAGCTATCAT
genomic: GATTCTGGTAAAATTCCTGAACAGCATGCGCTACTCGCAGAATCAAAGAGgtcagtgttc ... ttttcttcagGCAAGAGGTGCTGCAATTGGATAATGAAATTGTTTTCAATGAAGCTATCAT
EST: gi|58606351|gb|CK034384.1|CK034384
EST:     GCTACTCGCAGAATCAAAGAG                         GCAAGAGGTGCTGCAATTGGAT-ATGAAATTGTTTTGAAGTGAAGCTATCA
genomic: GCTACTCGCAGAATCAAAGAGgtcagtgttc ... ttttcttcagGCAAGAGGTGCTGCAATTGGATAATGAAATTGTTTTCAA-TGAAGCTATCA
EST: gi|29646264|gb|CB651271.1|CB651271
EST:     GATTCTGGTAAAATTCCTGAACAGCATGCGCTACTCGCAGAATCAAAGAG                         GCAAGAGGTGCTGCAATTGGATAATGAAATTGTTTTCAATGAAGCTATCAT
genomic: GATTCTGGTAAAATTCCTGAACAGCATGCGCTACTCGCAGAATCAAAGAGgtcagtgttc ... ttttcttcagGCAAGAGGTGCTGCAATTGGATAATGAAATTGTTTTCAATGAAGCTATCAT