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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATGATCCTGATGATCAACACCACATTGTCCGGATGCTGGATTTTTTTCTCTACCAAAATCATTTGTGTATAGCATTTGAAATGCTTGGCCATAACCTgtaagattgtcgtacttctcttcgctaatctattatataccatgtaactaattcatgtatcacttaaactcccacatctag

Basic information

species Oryza sativa
transcript LOC_Os02g47410.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47410.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM5G849796_T01 (Zea mays), 5'ss of exon 4
AATATGATCCTGATGATCAACACCACATTGTCCGGATGCTGGATTTTTTTCTCTACCAAAATCATTTGTGTATAGCATTTGAAATGCTTGGCCATAACCTgtaagattgtcgt-acttctcttcgctaatcta-ttatataccatgtaactaattcatgta-tcacttaaactcccacatctag--
||| ||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||  | ||||||||||||     | | ||  ||||   ||||||  ||| | |  |  |  | |||||||   | || |||||   ||  |  |   
AATTTGATCCTGATGATGAACATCACATTGTCCGGATGCTGGATTTTTTCCTCTACCAAAACCATTTGTGTATAGCCTTTGAAATGCTTGGTAACAACCTgtaagataactttcatttaacttcatcaatctaactatctgcactagatttgattcatgcggtgacataaacctgcattttcatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29638402|gb|CB643411.1|CB643411
EST:     ATTTGTGTATAGCATTTGAAATGCTTGGCCATAACCT                         TTATGAGCTGCTAAAAAGGAATAGTCTAAGAGGTTTGCAACTGAAATATGT
genomic: ATTTGTGTATAGCATTTGAAATGCTTGGCCATAACCTgtaagattgt ... ccacatctagTTATGAGCTGCTAAAAAGGAATAGTCTAAGAGGTTTGCAACTGAAATATGT
EST: gi|58610888|gb|CK038600.1|CK038600
EST:     CTCTACCAAAATCATTTGTGTATAGCATTTGAAATGCTTGGCCATAACCT                         TTATGAGCTGCTAAAAAGGAATAGTCTAAGAGGTTTGCAACTGAAATATGT
genomic: CTCTACCAAAATCATTTGTGTATAGCATTTGAAATGCTTGGCCATAACCTgtaagattgt ... ccacatctagTTATGAGCTGCTAAAAAGGAATAGTCTAAGAGGTTTGCAACTGAAATATGT
EST: gi|58666776|gb|CK055462.1|CK055462
EST:     CTCTACCAAAATCATTTGTGTATAGCATTTGAAATGCTTGGCCATAACCT                         TTATGAGCTGCTAAAAAGGAATAGTCTAAGAGGTTTGCAACTGAAATATGT
genomic: CTCTACCAAAATCATTTGTGTATAGCATTTGAAATGCTTGGCCATAACCTgtaagattgt ... ccacatctagTTATGAGCTGCTAAAAAGGAATAGTCTAAGAGGTTTGCAACTGAAATATGT