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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGTTGGTTAGCAAAGATGTCATAAAGCTGGCGGACTTTGGTCTTGCAAGGGAAGTTACATCCGTGCCACCATACACAGAATATGTGTCAACTCGCTGgttagtagcactctactcgcacacgtggacacaaatcccttttctttgttaatgttgatccacatgtgtttgaacatctcag

Basic information

species Oryza sativa
transcript LOC_Os02g47220.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47220.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G178822_T02 (Zea mays), 5'ss of exon 9
ATCTGTTGGTTAGCAAAGATGTCATAAAGCTGGCGGACTTTGGTCTTGCAAGGGAAGTTACATCCGTGCCACCATACACAGAATATGTGTCAACTCGCTGgttagtagcactc--tactcgc---acacgtggacacaaatcccttttctttgttaatgttgatccacatgtgtttgaacatctcag
|||||||||||||||||| |||||||||||| || |||||||||||||||||||||||  ||||  |||||||||| ||||||||||| |||||||||||||||| |    ||  |  || |   ||||    | | ||      | ||||   |  |||| |||| |||||  |||||  ||| ||
ATCTGTTGGTTAGCAAAGGTGTCATAAAGCTAGCAGACTTTGGTCTTGCAAGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCGCTGgttagcactgttcactcttcactagacaccaaaataaaatgaatctgtcttatcttttgttaatccccatgt--ttgaatgtcttag

upper sequence: LOC_Os02g47220.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G108829_T01 (Zea mays), 5'ss of exon 9
ATCTGTTGGTTAGCAAAGATGTCATAAAGCTGGCGGACTTTGGTCTTGCAAGGGAAGTTACATCCGTGCCACCATACACAGAATATGTGTCAACTCGCTGgttagta--gcactctactcgcac---acgtggacacaaatc---ccttttctttgttaatgttgatcca---catgtgtttgaacatctcag
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||  |||| ||||| ||||||||||| |||||||||||||||| |  || | ||  ||  ||   ||    | | |||     ||  |  |   |  |||||     |   | | ||||||    ||| ||
ATCTGTTGGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTGCAAGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactgcccactcttcaaactagacaccaaaataaaagggaccagtcttacatgcatgttttgttaatccctatgtttgggtgtcttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58660884|gb|CK049564.1|CK049564
EST:     AGGGAAGTTACATCCGTGCCACCATACACAGAATATGTGTCAACTCGCTG                         GTACCGAGCACCTGAAGTATTGCTCCAGTCATCTATCTATGATTCTGCAGT
genomic: AGGGAAGTTACATCCGTGCCACCATACACAGAATATGTGTCAACTCGCTGgttagtagca ... aacatctcagGTACCGAGCACCTGAAGTATTGCTCCAGTCATCTATCTATGATTCTGCAGT
EST: gi|24208295|gb|AU225322.1|AU225322
EST:     AGGGAAGTTACATCCGTGCCACCATACACAGAATATGTGTCAACTCGCTG                         GTACCGAGCACCTGAAGTATTGCTCCAGTCATCTATCTATGATTCTGCAGT
genomic: AGGGAAGTTACATCCGTGCCACCATACACAGAATATGTGTCAACTCGCTGgttagtagca ... aacatctcagGTACCGAGCACCTGAAGTATTGCTCCAGTCATCTATCTATGATTCTGCAGT
EST: gi|163923153|gb|EG709322.1|EG709322
EST:     AGGGAAGTTACATCCGTGCCACCATACACAGAATATGTGTCAACTCGCTG                         GTACCGAGCACCTGAAGTATTGCTCCAGTCATCTATCTATGATTCTGCAGT
genomic: AGGGAAGTTACATCCGTGCCACCATACACAGAATATGTGTCAACTCGCTGgttagtagca ... aacatctcagGTACCGAGCACCTGAAGTATTGCTCCAGTCATCTATCTATGATTCTGCAGT
EST: gi|88256807|gb|CI354588.1|CI354588
EST:     AGGGAAGTTACATCCGTGCCACCATACACAGAATATGTGTCAACTCGCTG                         GTACCGAGCACCTGAAGTATTGCTCCAGTCATCTATCTATGATTCTGCAGT
genomic: AGGGAAGTTACATCCGTGCCACCATACACAGAATATGTGTCAACTCGCTGgttagtagca ... aacatctcagGTACCGAGCACCTGAAGTATTGCTCCAGTCATCTATCTATGATTCTGCAGT
EST: gi|33797218|gb|CF324473.1|CF324473
EST:     AGGGAAGTTACATCCGTGCCACCATACACAGAATATGTGTCAACTCGCTG                         GTACCGAGCACCTGAAGTATTGCTCCAGTCATCTATCTATGATTCTGCAGT
genomic: AGGGAAGTTACATCCGTGCCACCATACACAGAATATGTGTCAACTCGCTGgttagtagca ... aacatctcagGTACCGAGCACCTGAAGTATTGCTCCAGTCATCTATCTATGATTCTGCAGT
EST: gi|88664333|gb|CI687436.1|CI687436
EST:     TTACATCCGTGCCACCATACACAGAATATGTGTCAACTCGCTG                         GTACCGAGCACCTGAAGTATTGCTCCAGTCATCTATCTATGATTCTGCAGT
genomic: TTACATCCGTGCCACCATACACAGAATATGTGTCAACTCGCTGgttagtagca ... aacatctcagGTACCGAGCACCTGAAGTATTGCTCCAGTCATCTATCTATGATTCTGCAGT
EST: gi|58675617|gb|CK064304.1|CK064304
EST:     AGGGAAGTTACATCCGTGCCACCATACACAGAATATGTGTCAACTCGCTG                         GTACCGAGCACCTGAAGTATTGCTCCAGTCATCTATCTATGATTCTGCAGT
genomic: AGGGAAGTTACATCCGTGCCACCATACACAGAATATGTGTCAACTCGCTGgttagtagca ... aacatctcagGTACCGAGCACCTGAAGTATTGCTCCAGTCATCTATCTATGATTCTGCAGT