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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGTCAATTGGAAGTGGTGGCAAACACCTGTCTTTGTGACTTGGCTGTCCAACAGGAAAAGGCTAGCACAAGGCTGACATTGACCGGCATAATGGACAGgtaactttcatattgacttactatttttaggtcacctttttcttatcaagtatgttgtctttgcag

Basic information

species Oryza sativa
transcript LOC_Os02g47220.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58610974|gb|CK038686.1|CK038686
EST:     CATTGACCGGCATAATGGACAG                         ATTCAAAATGATTAAGGAAGTTGGTGACGGGACTTTCGGGAGTGTATGGCG
genomic: CATTGACCGGCATAATGGACAGgtaactttca ... gtctttgcagATTCAAAATGATTAAGGAAGTTGGTGACGGGACTTTCGGGAGTGTATGGCG
EST: gi|58662505|gb|CK051191.1|CK051191
EST:     CAACAGGAAAAGGCTAGCACAAGGCTGACATTGACCGGCATAATGGACAG                         ATTCAAAATGATTAAGGAAGTTGGTGACGGGACTTTCGGGAGTGTATGGCG
genomic: CAACAGGAAAAGGCTAGCACAAGGCTGACATTGACCGGCATAATGGACAGgtaactttca ... gtctttgcagATTCAAAATGATTAAGGAAGTTGGTGACGGGACTTTCGGGAGTGTATGGCG
EST: gi|29625051|gb|CB630062.1|CB630062
EST:     CAACAGGAAAAGGCTAGCACAAGGCTGACATTGACCGGCATAATGGACAG                         ATTCAAAATGATTAAGGAAGTTGGTGACGGGACTTTCGGGAGTGTATGGCG
genomic: CAACAGGAAAAGGCTAGCACAAGGCTGACATTGACCGGCATAATGGACAGgtaactttca ... gtctttgcagATTCAAAATGATTAAGGAAGTTGGTGACGGGACTTTCGGGAGTGTATGGCG
EST: gi|88839102|gb|CI378026.1|CI378026
EST:     ACATTAACCGCCATAATGGACAC                         ATTCAAAATGATTAAGGAAATTGGTGACGGGACTTTCGGGAGTGTATGGCG
genomic: ACATTGACCGGCATAATGGACAGgtaactttca ... gtctttgcagATTCAAAATGATTAAGGAAGTTGGTGACGGGACTTTCGGGAGTGTATGGCG
EST: gi|58664681|gb|CK053367.1|CK053367
EST:     CAACAGGAAAAGGCTAGCACAAGGCTGACATTGACCGGCATAATGGACAG                         ATTCAAAATGATTAAGGAAGTTGGTGACGGGACTTTCGGGAGTGTATGGCG
genomic: CAACAGGAAAAGGCTAGCACAAGGCTGACATTGACCGGCATAATGGACAGgtaactttca ... gtctttgcagATTCAAAATGATTAAGGAAGTTGGTGACGGGACTTTCGGGAGTGTATGGCG
EST: gi|58670491|gb|CK059177.1|CK059177
EST:     CAACAGGAAAAGGCTAGCACAAGGCTGACATTGACCGGCATAATGGACAG                         ATTCAAAATGATTAAGGAAGTTGGTGACGGGACTTTCGGGAGTGTATGGCG
genomic: CAACAGGAAAAGGCTAGCACAAGGCTGACATTGACCGGCATAATGGACAGgtaactttca ... gtctttgcagATTCAAAATGATTAAGGAAGTTGGTGACGGGACTTTCGGGAGTGTATGGCG
EST: gi|58665074|gb|CK053760.1|CK053760
EST:     CAACAGGAAAAGGCTAGCACAAGGCTGACATTGACCGGCATAATGGACAG                         ATTCAAAATGATTAAGGAAGTTGGTGACGGGACTTTCGGGAGTGTATGGCG
genomic: CAACAGGAAAAGGCTAGCACAAGGCTGACATTGACCGGCATAATGGACAGgtaactttca ... gtctttgcagATTCAAAATGATTAAGGAAGTTGGTGACGGGACTTTCGGGAGTGTATGGCG