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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTGCATACAGACTCTTTCTGATCATACAGGTGTTGTTATGTCTGTATTGTGTTGGGATCAATTCCTATTATCATGTTCCTTGGATCAAACAATAAAAgttagtctctgtccttgactttatgttgtttaataattttgcagatatgtcttcacattccatatcttacccttttcattgcatttcacactcgttcattttgttcctgttcttctaacatcatatctgtaatcacgttttatcctttcagtgcattcatacttctacgctgtgtttctcttcag

Basic information

species Oryza sativa
transcript LOC_Os02g45480.4
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g45480.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G037200_T02 (Zea mays), 5'ss of exon 6
GCAGTGCATACAGACTCTTTCTGATCATACAGGTGTTGTTATGTCTGTATTGTGTTGGGATCAATTCCTATTATCATGTTCCTTGGATCAAACAATAAAAgttagtctctgtccttgactttatgttgtttaataattttgcagatatgtcttcacattccatatcttacccttttcattgcatttcacactcgttcattttgttcctgttcttctaacatcatatctgtaatcacgttttatcctttcagtgcattcatacttctacgctgtgtttctcttcag
|||||||||||||||||||||||||||||| | |||||||||||| ||  | || ||||||||||| |||||||| || || ||||||||||||||||||||||||| |  ||     | | || ||||| | ||||||   |  | | | |  | |||   ||| |  ||||| |||  ||  ||||   |  |     || ||   |  |                                                                         
GCAGTGCATACAGACTCTTTCTGATCATACCGATGTTGTTATGTCCGTGCTTTGCTGGGATCAATTTCTATTATCTTGCTCTTTGGATCAAACAATAAAAgttagtcgccatctacatcatcattttgttgagtaatttcataattctctgtcgatattaggtattt--cccttgtcaaagctgttcatggttctaataattattttggcgcag-----------------------------------------------------------------------

upper sequence: LOC_Os02g45480.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G037200_T01 (Zea mays), 5'ss of exon 6
GCAGTGCATACAGACTCTTTCTGATCATACAGGTGTTGTTATGTCTGTATTGTGTTGGGATCAATTCCTATTATCATGTTCCTTGGATCAAACAATAAAAgttagtctctgtccttgactttatgttgtttaataattttgcagatatgtcttcacattccatatcttacccttttcattgcatttcacactcgttcattttgttcctgttcttctaacatcatatctgtaatcacgttttatcctttcagtgcattcatacttctacgctgtgtttctcttcag
                                 |||||||||||| ||  | || ||||||||||| |||||||| || || ||||||||||||||||||||||||| |  ||     | | || ||||| | ||||||   |  | | | |  | |||   ||| |  ||||| |||  ||  ||||   |  |     || ||   |  |                                                                         
--------------------------------ATGTTGTTATGTCCGTGCTTTGCTGGGATCAATTTCTATTATCTTGCTCTTTGGATCAAACAATAAAAGTTAGTCGCCATCTACATCATCATTTTGTTGAgtaatttcataattctctgtcgatattaggtattt--cccttgtcaaagctgttcatggttctaataattattttggcgcag-----------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29675454|gb|CB671729.1|CB671729
EST:     TGTGTTGGGATCAATTCCTATTATCATGTTCCTTGGATCAAACAATAAAA                         GTTTGGGCAGCTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAA
genomic: TGTGTTGGGATCAATTCCTATTATCATGTTCCTTGGATCAAACAATAAAAgttagtctct ... ttctcttcagGTTTGGGCAGCTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAA
EST: gi|218479278|gb|FG957154.1|FG957154
EST:     TGTGTTGGGATCAATTCCTATTATCATGTTCCTTGGATCAAACAATAAAA                         GTTTGGGCAGCTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAA
genomic: TGTGTTGGGATCAATTCCTATTATCATGTTCCTTGGATCAAACAATAAAAgttagtctct ... ttctcttcagGTTTGGGCAGCTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAA
EST: gi|29618177|gb|CB623189.1|CB623189
EST:     TGTGTTGGGATCAATTCCTATTATCATGTTCCTTGGATCAAACAATAAAA                         GTTTGTGCAGTTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAA
genomic: TGTGTTGGGATCAATTCCTATTATCATGTTCCTTGGATCAAACAATAAAAgttagtctct ... ttctcttcagGTTTGGGCAGCTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAA
EST: gi|29657539|gb|CB653814.1|CB653814
EST:     TGTGTTGGGATCAATTCCTATTATCATGTTCCTTGGATCAAACAATAAAA                         GTTTGGGCAGCTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAA
genomic: TGTGTTGGGATCAATTCCTATTATCATGTTCCTTGGATCAAACAATAAAAgttagtctct ... ttctcttcagGTTTGGGCAGCTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAA
EST: gi|33794977|gb|CF323368.1|CF323368
EST:     TGTGTTGGGATCAATTCCTATTATCATGTTCCTTGGATCAAACAATAAAA                         GTTTGGGCAGCTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAA
genomic: TGTGTTGGGATCAATTCCTATTATCATGTTCCTTGGATCAAACAATAAAAgttagtctct ... ttctcttcagGTTTGGGCAGCTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAA
EST: gi|58674413|gb|CK063099.1|CK063099
EST:     TGTGTTGGGATCAATTCCTATTATCATGTTCCTTGGATCAAACAATAAAA                         GTTTGGGCAGCTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAA
genomic: TGTGTTGGGATCAATTCCTATTATCATGTTCCTTGGATCAAACAATAAAAgttagtctct ... ttctcttcagGTTTGGGCAGCTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAA