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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCACCATTTAGCCATGTTTTTAGCTGGAAGGCAAGCGGATGCTCCTCAAGAAGCTCTTCAAGTTCTTGACATTGTTCTACGTGAATTGCCTACTGCAAGgtaaatttaccctgccatttgttgctatatcattatcatgttagcaagcttttgaacatttctatattttttatatgtag

Basic information

species Oryza sativa
transcript LOC_Os02g45070.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29669479|gb|CB665754.1|CB665754
EST:     TCTACGTGAATTGCCTACTGCAAG                         GTACTCTCCAGTTGCAAGGTCATTTTATTCGCCTAACTTAGGAAGGCGCCA
genomic: TCTACGTGAATTGCCTACTGCAAGgtaaatttac ... ttatatgtagGTACTCTCCAGTTGCAAGGTCATTTTATTCGCCTAACTTAGGAAGGCGCCA
EST: gi|29626578|gb|CB631589.1|CB631589
EST:     GAAGCTCTTCAAGTTCTTGACATTGTTCTACGTGAATTGCCTACTGCAAG                         GTACTCTCCAGTTGCAAGGTCATTTTATTCGCCTAACTTAGGAAGGCGCCA
genomic: GAAGCTCTTCAAGTTCTTGACATTGTTCTACGTGAATTGCCTACTGCAAGgtaaatttac ... ttatatgtagGTACTCTCCAGTTGCAAGGTCATTTTATTCGCCTAACTTAGGAAGGCGCCA