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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTGGAGATGGTTTTGGGGCTACACCGGAGATGAGCAAACGGAACTTGATATGGGTTGTCAGCAAAATCCAGCTTCTTGTTGAGCAATACCCCGCATGgtacttttttgcaaacctttgctcctcttgatatatgtatctttggtttctttctatcaattccttactctaagttgtcatttaattttcacattttaaa...

Basic information

species Oryza sativa
transcript LOC_Os02g43090.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g43090.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM5G829544_T01 (Zea mays), 5'ss of exon 3
TTCTTGGAGATGGTTTTGGGGCTACACCGGAGATGAGCAAACGGAACTTGATATGGGTTGTCAGCAAAATCCAGCTTCTTGTTGAGCAATACCCCGCATGgtacttttttgcaaacctttgc--tcctcttgatatatgtatctttggtttctttctatcaattccttactctaagttgtcat--ttaattttcacattttaaa
||||||||||||||||||| || ||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||| ||| |||||||| |  |   | | |  || | | |      |   || ||||||    |  | | || || || | |   ||| | ||   | | |   
TTCTTGGAGATGGTTTTGGCGCCACACCAGAGATGAGCAAACGAAACTTGATCTGGGTTGTCAGCAAAATTCAGCTTCTTGTTGAGCAATACCCCTCATGgtacgtttctgcaaaccgtaacaaccttatccatttctctgaaaacgccatccttctattcgctt-tcaatcaaatttataaccgttactctttcaactct---

upper sequence: LOC_Os02g43090.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G007489_T01 (Zea mays), 5'ss of exon 3
TTCTTGGAGATGGTTTTGGGGCTACACCGGAGATGAGCAAACGGAACTTGATATGGGTTGTCAGCAAAATCCAGCTTCTTGTTGAGCAATACCCCGCATGgtacttttttgcaaacctttgctcctcttgatatatgtatctttggtttctttctatcaattccttactctaagttgtcatttaattttcacattttaaa---
||||||||||||||||||| || || || |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| | ||||||   |||||| |||  |||||||||  |  | ||| ||  || | ||      | |  ||  || |||   |  |  |    |   | |||   | ||  ||| ||   
TTCTTGGAGATGGTTTTGGCGCCACGCCAGAGATGAGCAAACGAAACTTGATCTGGGTTGTCAGCAAAATTCAGCTTCTTGTTGAGAAGTACCCCTTGTGgtacgtttccgcaaaccttaacaaccctt-atccatttctcggaaaatgccatccttctattagct--ttcagtcagatctataaccgttactctttcaactc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58678184|gb|CK066871.1|CK066871
EST:     ATATGGGTTGTCAGCAAAATCCAGCTTCTTGTTGAGCAATACCCCGCATG                         GGGAGATATGGTTCAAGTTGACACATGGGTCGCTGCTGCTGGCAAAAATGG
genomic: ATATGGGTTGTCAGCAAAATCCAGCTTCTTGTTGAGCAATACCCCGCATGgtactttttt ... atggttttagGGGAGATATGGTTCAAGTTGACACATGGGTCGCTGCTGCTGGCAAAAATGG
EST: gi|29643342|gb|CB648349.1|CB648349
EST:     ATATGGGTTGTCAGCAAAATCCAGCTTCTTGTTGAGCAATACCCCGCATG                         GGGAGATATGGTTCAAGTTGACACATGGGTCGCTGCTGCTGGCAAAAATGG
genomic: ATATGGGTTGTCAGCAAAATCCAGCTTCTTGTTGAGCAATACCCCGCATGgtactttttt ... atggttttagGGGAGATATGGTTCAAGTTGACACATGGGTCGCTGCTGCTGGCAAAAATGG