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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTGACAGAAACTACATCCCAAAAATCGGAGACTTTGGAATTGCCAAGCTGTTCCCGGACAATGTTAGTCATGTTAGCACACGTGTGATTGGGACAACgtaagctgttctttcaggcttcagcaatgatcgagctgcatgcaacataatcgaaataaaccttattctctgcatgcag

Basic information

species Oryza sativa
transcript LOC_Os02g42620.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29662664|gb|CB658939.1|CB658939
EST:     CTGTTCCCGGACAATGTTAGTCATGTTAGCACACGTGTGATTGGGACAAC                         TGGCTACATGGCACC
genomic: CTGTTCCCGGACAATGTTAGTCATGTTAGCACACGTGTGATTGGGACAACgtaagctgtt ... ctgcatgcagTGGCTACATGGCACC
EST: gi|29662665|gb|CB658940.1|CB658940
EST:     CTGTTCCCGGACAATGTTAGTCATGTTAGCACACGTGTGATTGGGACAAC                         TGGCTACATGGCACCTGAATACGTCGTGCACGGACAGCTGACGAAGAAGGC
genomic: CTGTTCCCGGACAATGTTAGTCATGTTAGCACACGTGTGATTGGGACAACgtaagctgtt ... ctgcatgcagTGGCTACATGGCACCTGAATACGTCGTGCACGGACAGCTGACGAAGAAGGC