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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTATTTCAACTTGCATTCTCTATTCCTGAGCAATACCCTCTCCTTCCTCCGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctgcattgccttctctgcgtacattttactttaggaaatttgacctatttgaaggcatttgtctctttcaagtgttggtgagaatgtaaatat...

Basic information

species Oryza sativa
transcript LOC_Os02g42314.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88988696|gb|CI039115.1|CI039115
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|300216021|gb|HO088647.1|HO088647
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|86905439|gb|CI285402.1|CI285402
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|2796274|gb|AA749568.1|AA749568
EST:     CGCAANT-CGCTTCTTGACCAAAATTTTGCGCCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCG
EST: gi|88334413|gb|CI642658.1|CI642658
EST:     GCAAGTTCGCTTCTTGACCAAAATTTTCCACCCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGGCTGGATATCTT
genomic: GCAAGTTCGCTTCTTGACCAAAATTTTCCACCC-GAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTT
EST: gi|9865085|gb|AU100835.1|AU100835
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTT
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTT
EST: gi|88243713|gb|CI242835.1|CI242835
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|88386007|gb|CI570642.1|CI570642
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACACGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|88595265|gb|CI714086.1|CI714086
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCC
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCC
EST: gi|55438029|gb|CV732308.1|CV732308
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|88308370|gb|CI649585.1|CI649585
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCC
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCC
EST: gi|33655539|gb|CF278153.1|CF278153
EST:     ACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
genomic: ACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|33655538|gb|CF278152.1|CF278152
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|88342554|gb|CI637130.1|CI637130
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGG
EST: gi|9865086|gb|AU100836.1|AU100836
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|87006784|gb|CI285818.1|CI285818
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|186892747|gb|FG124648.1|FG124648
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|88967252|gb|CI002446.1|CI002446
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|89194948|gb|CI003412.1|CI003412
EST:     CGCAAGTTCGCTTCTTGACCCAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGGGCCCAGCATGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|88393637|gb|CI619929.1|CI619929
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATT
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATT
EST: gi|88348941|gb|CI653985.1|CI653985
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCT
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCT
EST: gi|88244898|gb|CI242749.1|CI242749
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|88595236|gb|CI714057.1|CI714057
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGC
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGC
EST: gi|88270691|gb|CI385949.1|CI385949
EST:     GAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
genomic: GAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|25806709|gb|CA762670.1|CA762670
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|33823074|gb|CF337340.1|CF337340
EST:     CGCAAGTTCGCT-CTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGA-TGCGTGGAGCCCAGCATGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|86527972|gb|CI168178.1|CI168178
EST:     TGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
genomic: TGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|88592549|gb|CI710658.1|CI710658
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGG
EST: gi|86260810|gb|CI000258.1|CI000258
EST:     CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|88253294|gb|CI351920.1|CI351920
EST:     TCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
genomic: TCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|88849807|gb|CI001513.1|CI001513
EST:     CGCAAGTTCGCTTCTTGACCCAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG
EST: gi|33689647|gb|CF317886.1|CF317886
EST:     CGCAAGTTCGC-TCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAG                         ACAGGTGAGATTTGCCTGGATATCTTGAAG-ATGCGTGGAGCCCAGCATGG
genomic: CGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctg ... gtgtttccagACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTATTTCAACTTGCATTCTCTATTCCTGAGCAATACCCTCTCCTTCCTCCGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGgttacttctgcattgccttctctgcgtacattttactttaggaaatttgacctatttgaaggcatttgtctctttcaagtgttggtgagaatgtaaatat

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