1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCTATTGGATGCTGATCTGGAAAGTGATATTCTTGGTTGGCAGTACATATCTGGGAGCCTGCCTGATGGCCATGAGCTCAGTCGTCTTGATAATCCAGAGgtatgcagtcactaaagcacaaaatcctttttttttttttttttttgctatcaggtaagcttgattaaggcatgcttggtctttaccacattttcgatgg...
species | Oryza sativa |
transcript | LOC_Os02g41550.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGGGAGCCTGCCTGATGGCCATGAGCTCAGTCGTCTTGATAATCCAGAG GTTCAAGGTCAAAAGTATGACCCAGATGGTGTATATGTAAGAACTTGGATAEST: gi|29681035|gb|CB677310.1|CB677310
genomic: CTGGGAGCCTGCCTGATGGCCATGAGCTCAGTCGTCTTGATAATCCAGAGgtatgcagtc ... gcaaaactagGTTCAAGGTCAAAAGTATGACCCAGATGGTGTATATGTAAGAACTTGGATA
EST: CTGGGAGCCTGCCTGATGGCCATGAGCTCAGTCGTCTTGATAATCCAGAG GTTCAAGGTCAAAAGTATGACCCAGATGGTGTATATGTAAGAACTTGGATAEST: gi|29668437|gb|CB664712.1|CB664712
genomic: CTGGGAGCCTGCCTGATGGCCATGAGCTCAGTCGTCTTGATAATCCAGAGgtatgcagtc ... gcaaaactagGTTCAAGGTCAAAAGTATGACCCAGATGGTGTATATGTAAGAACTTGGATA
EST: CTGGGAGCCTGCCTGATGGCCATGAGCTCAGTCGTCTTGATAATCCAGAG GTTCAAGGTCAAAAGTATGACCCAGATGGTGTATATGTAAGAACTTGGATAEST: gi|27547709|gb|CA765778.2|CA765778
genomic: CTGGGAGCCTGCCTGATGGCCATGAGCTCAGTCGTCTTGATAATCCAGAGgtatgcagtc ... gcaaaactagGTTCAAGGTCAAAAGTATGACCCAGATGGTGTATATGTAAGAACTTGGATA
EST: CTGGGAGCCTGCCTGATGGCCATGAGCTCAGTCGTCTTGATAATCCAGAG GTTCAAGGTCAAAAGTATGACCCAGATGGTGTATATGTAAGAACTTGGATAEST: gi|163922706|gb|EG714182.1|EG714182
genomic: CTGGGAGCCTGCCTGATGGCCATGAGCTCAGTCGTCTTGATAATCCAGAGgtatgcagtc ... gcaaaactagGTTCAAGGTCAAAAGTATGACCCAGATGGTGTATATGTAAGAACTTGGATA
EST: CTGGGAGCCTGCCTGATGGCCATGAGCTCAGTCGTCTTGATAATCCAGAG GTTCAAGGTCAAAAGTATGACCCAGATGGTGTATATGTAAGAACTTGGATAEST: gi|33681243|gb|CF309482.1|CF309482
genomic: CTGGGAGCCTGCCTGATGGCCATGAGCTCAGTCGTCTTGATAATCCAGAGgtatgcagtc ... gcaaaactagGTTCAAGGTCAAAAGTATGACCCAGATGGTGTATATGTAAGAACTTGGATA
EST: CTGGGAGCCTGCCTGATGGCCATGAGCTCAGTCGTCTTGATAATCCAGAG GTTCAAGGTCAAAAGTATGACCCAGATGGTGTATATGTAAGAACTTGGATAEST: gi|29674792|gb|CB671067.1|CB671067
genomic: CTGGGAGCCTGCCTGATGGCCATGAGCTCAGTCGTCTTGATAATCCAGAGgtatgcagtc ... gcaaaactagGTTCAAGGTCAAAAGTATGACCCAGATGGTGTATATGTAAGAACTTGGATA
EST: CTGGGAGCCTGCCTGATGGCCATGAGCTCAGTCGTCTTGATAATCCAGAG GTTCAAGGTCAAAAGTATGACCCAGATGGTGTATATGTAAGAACTTGGATA
genomic: CTGGGAGCCTGCCTGATGGCCATGAGCTCAGTCGTCTTGATAATCCAGAGgtatgcagtc ... gcaaaactagGTTCAAGGTCAAAAGTATGACCCAGATGGTGTATATGTAAGAACTTGGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTATTGGATGCTGATCTGGAAAGTGATATTCTTGGTTGGCAGTACATATCTGGGAGCCTGCCTGATGGCCATGAGCTCAGTCGTCTTGATAATCCAGAGgtatgcagtcactaaagcacaaaatcctttttttttttttttttttgctatcaggtaagcttgattaaggcatgcttggtctttaccacattttcgatgg
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