1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagtttttagtaatatgtagcccccttcagcatctatattccaatttgaactgcaatcagcttgccattttgttttgctaccacagtttcatttggtg...
species | Oryza sativa |
transcript | LOC_Os02g40830.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG GTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATCEST: gi|66913068|gb|CX099916.1|CX099916
genomic: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagttttt ... gttttgacagGTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATC
EST: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG GTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATCEST: gi|58681651|gb|CK070338.1|CK070338
genomic: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagttttt ... gttttgacagGTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATC
EST: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG GTCTACTTATGTGAGAAACTGEST: gi|88361440|gb|CI605221.1|CI605221
genomic: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagttttt ... gttttgacagGTCTACTTATGTGAGAAACTG
EST: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG GTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATCEST: gi|55434355|gb|CV730299.1|CV730299
genomic: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagttttt ... gttttgacagGTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATC
EST: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG GTCTACTTATGTGAGAAACTGTCACTTGEST: gi|58668786|gb|CK057472.1|CK057472
genomic: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagttttt ... gttttgacagGTCTACTTATGTGAGAAACTGTCACTTG
EST: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG GTCTACTTATGTGAGAAACTGTCEST: gi|29662328|gb|CB658603.1|CB658603
genomic: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagttttt ... gttttgacagGTCTACTTATGTGAGAAACTGTC
EST: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG GTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATCEST: gi|58588874|gb|CF987182.1|CF987182
genomic: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagttttt ... gttttgacagGTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATC
EST: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG GTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATCEST: gi|4714828|gb|AU055945.1|AU055945
genomic: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagttttt ... gttttgacagGTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATC
EST: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG GTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATCEST: gi|29662110|gb|CB658385.1|CB658385
genomic: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagttttt ... gttttgacagGTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATC
EST: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG GTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATCEST: gi|38478366|gb|CF962499.1|CF962499
genomic: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagttttt ... gttttgacagGTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATC
EST: AGATTCTGGTAACAAAAGAAACTGGTCCACAGGGGAAGATTGTGAGCAAG GTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATCEST: gi|58684186|gb|CK072873.1|CK072873
genomic: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagttttt ... gttttgacagGTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATC
EST: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG GTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATCEST: gi|58588447|gb|CF986755.1|CF986755
genomic: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagttttt ... gttttgacagGTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATC
EST: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG GTCTACTTATGTGAGAAAATGTCACTTGTTAATGAGATGTACTTCGCCATCEST: gi|33688588|gb|CF316827.1|CF316827
genomic: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagttttt ... gttttgacagGTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATC
EST: GATTCTGGTAACAAAACAAACTGGTCCACAGGGGGAAGATTGTGAGCAAG GTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATCEST: gi|88730444|gb|CI754057.1|CI754057
genomic: GATTCTGGTAACAAAACAAACTGGTCCACAGGGG-AAGATTGTGAGCAAGgttagttttt ... gttttgacagGTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATC
EST: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG GTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATCEST: gi|4880970|gb|AU065269.1|AU065269
genomic: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagttttt ... gttttgacagGTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATC
EST: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG GGTCTAATTTATGTGAGGAAACTGTCANTTGTTAATGEST: gi|58592643|gb|CF990951.1|CF990951
genomic: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagttttt ... gttttgacagG-TCTACTT-ATGTGAG-AAACTGTCACTTGTTAATG
EST: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG GTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATCEST: gi|33794775|gb|CF323267.1|CF323267
genomic: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagttttt ... gttttgacagGTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATC
EST: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG GTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATCEST: gi|27577186|gb|CA999880.1|CA999880
genomic: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagttttt ... gttttgacagGTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATC
EST: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG GTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATC
genomic: AGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagttttt ... gttttgacagGTCTACTTATGTGAGAAACTGTCACTTGTTAATGAGATGTACTTCGCCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAGgttagtttttagtaatatgtagcccccttcagcatctatattccaatttgaactgcaatcagcttgccattttgttttgctaccacagtttcatttggtg
- - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agccccc