1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGTAGGAGTTGCTGTATGTACTGTGACTGATGTTAGTGTGAATTCAAAAGGGCTGCTAGCAGCTGTAATTGCAGTTTGGAGCACAGCACTACAGCAGCATgtgagtatttgattgtgcacattttgacgtattccatgccctagtgataactgctctgtttggctcctttttaaataccttggcttctgaatgagcagtt...
species | Oryza sativa |
transcript | LOC_Os02g40090.4 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGCTGCTAGCAGCTGTAATTGCAGTTTGGAGCACAGCACTACAGCAGCAT TACGTTCATCACCTTCAAAAGAAGTACTCGCTTGGCTCATTCAACCTATTGEST: gi|29639690|gb|CB644699.1|CB644699
genomic: GGCTGCTAGCAGCTGTAATTGCAGTTTGGAGCACAGCACTACAGCAGCATgtgagtattt ... catgctgcagTACGTTCATCACCTTCAAAAGAAGTACTCGCTTGGCTCATTCAACCTATTG
EST: GGCTGCTAGCAGCTGTAATTGCAGTTTGGAGCACAGCACTACAGCAGCAT TACGTTCATCACCTTCAAAAGAAGTACTCGCTTGGCTCATTCAACCTATTG
genomic: GGCTGCTAGCAGCTGTAATTGCAGTTTGGAGCACAGCACTACAGCAGCATgtgagtattt ... catgctgcagTACGTTCATCACCTTCAAAAGAAGTACTCGCTTGGCTCATTCAACCTATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTAGGAGTTGCTGTATGTACTGTGACTGATGTTAGTGTGAATTCAAAAGGGCTGCTAGCAGCTGTAATTGCAGTTTGGAGCACAGCACTACAGCAGCATgtgagtatttgattgtgcacattttgacgtattccatgccctagtgataactgctctgtttggctcctttttaaataccttggcttctgaatgagcagtt
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA