1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTCCGATGTATACAACACTGAGGCGCACAACAGTAGTCTTTACAATGACAATGGAGTATTTCTTGGCAAAACAGAAGCATACGCCACCTATAATCGGCAGgtacatgtctataaaaatgatttttccttttttttactgtattataaattcgtaatattctcagaatagtctgacgtgctagtaactaatgtaagcttcc...
species | Oryza sativa |
transcript | LOC_Os02g40030.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGGAGTATTTCTTGGCAAAACAGAAGCATACGCCACCTATAATCGGCAG CGTGGCTTTGATTGTATTTGGAGCATTTATCGCTGGAGCTCGAGACCTGTCEST: gi|29671157|gb|CB667432.1|CB667432
genomic: ATGGAGTATTTCTTGGCAAAACAGAAGCATACGCCACCTATAATCGGCAGgtacatgtct ... ggtttgtcagCGTGGCTTTGATTGTATTTGGAGCATTTATCGCTGGAGCTCGAGACCTGTC
EST: ATGGAGTATTTCTTGGCAAAACAGAAGCATACGCCACCTATAATCGGCAG CGTGGCTTTGATTGTATTTGGAGCATTTATCGCTGGAGCTCGAGACCTGTCEST: gi|29672145|gb|CB668420.1|CB668420
genomic: ATGGAGTATTTCTTGGCAAAACAGAAGCATACGCCACCTATAATCGGCAGgtacatgtct ... ggtttgtcagCGTGGCTTTGATTGTATTTGGAGCATTTATCGCTGGAGCTCGAGACCTGTC
EST: ATGGAGTATTTCTTGGCAAAACAGAAGCATACGCCACCTATAATCGGCAG CGTGGCTTTGATTGTATTTGGAGCATTTATCGCTGGAGCTCGAGACCTGTCEST: gi|29670136|gb|CB666411.1|CB666411
genomic: ATGGAGTATTTCTTGGCAAAACAGAAGCATACGCCACCTATAATCGGCAGgtacatgtct ... ggtttgtcagCGTGGCTTTGATTGTATTTGGAGCATTTATCGCTGGAGCTCGAGACCTGTC
EST: AGAAGCATACGCCACCTATAATCGGCAG CGTGGCTTTGATTGTATTTGGAGCATTTATCGCTGGAGCTCGAGACCTGTCEST: gi|58667565|gb|CK056251.1|CK056251
genomic: AGAAGCATACGCCACCTATAATCGGCAGgtacatgtct ... ggtttgtcagCGTGGCTTTGATTGTATTTGGAGCATTTATCGCTGGAGCTCGAGACCTGTC
EST: ATGGAGTATTTCTTGGCAAAACAGAAGCATACGCCACCTATAATCGGCAG CGTGGCTTTGATCGTATTTGGAGCATTTATCGCTGGAGEST: gi|29672495|gb|CB668770.1|CB668770
genomic: ATGGAGTATTTCTTGGCAAAACAGAAGCATACGCCACCTATAATCGGCAGgtacatgtct ... ggtttgtcagCGTGGCTTTGATTGTATTTGGAGCATTTATCGCTGGAG
EST: GCAAAACAGAAGCATACGCCACCTATAATCGGCAG CGTGGCTTTGATTGTATTTGGAGCATTTATCGCTGGAGCTCGAGACCTGTC
genomic: GCAAAACAGAAGCATACGCCACCTATAATCGGCAGgtacatgtct ... ggtttgtcagCGTGGCTTTGATTGTATTTGGAGCATTTATCGCTGGAGCTCGAGACCTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCGATGTATACAACACTGAGGCGCACAACAGTAGTCTTTACAATGACAATGGAGTATTTCTTGGCAAAACAGAAGCATACGCCACCTATAATCGGCAGgtacatgtctataaaaatgatttttccttttttttactgtattataaattcgtaatattctcagaatagtctgacgtgctagtaactaatgtaagcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa