1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TACAGGGAACCATCTGAAAGGGTCACGGCCTCTTATAACATTTTCTACAAATTTTGATGAACAACCTCACTGGCAGCTTGTGAAAGAAATGCTAACCCAGgtgcatgactgatttgatatgttattttgctctacatgcattcttatcaatgaacaagttgatcatgcactagactaaataactaatctttatcaactta...
species | Oryza sativa |
transcript | LOC_Os02g37870.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTTTGATGAACAACCTCACTGGCAGCTTGTGAAAGAAATGCTAACCCAG ATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCATEST: gi|25806580|gb|CA762541.1|CA762541
genomic: ATTTTGATGAACAACCTCACTGGCAGCTTGTGAAAGAAATGCTAACCCAGgtgcatgact ... tgctctgcagATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCAT
EST: TGTGAAAGAAATGCTAACCCAG ATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCATEST: gi|27577569|gb|CB000264.1|CB000264
genomic: TGTGAAAGAAATGCTAACCCAGgtgcatgact ... tgctctgcagATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCAT
EST: ATTTTGATGAACAACCTCACTGGCAGCTTGTGAAAGAAATGCTAACCCAG ATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCATEST: gi|87036060|gb|CI189507.1|CI189507
genomic: ATTTTGATGAACAACCTCACTGGCAGCTTGTGAAAGAAATGCTAACCCAGgtgcatgact ... tgctctgcagATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCAT
EST: ATTTTGATGAACAACCTCACTGGCAGCTTGTGAAAGAAATGCTAACCCAG ATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCATEST: gi|88981009|gb|CI021136.1|CI021136
genomic: ATTTTGATGAACAACCTCACTGGCAGCTTGTGAAAGAAATGCTAACCCAGgtgcatgact ... tgctctgcagATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCAT
EST: GCAGCTTGTGAAAGAAATGCTAACCCAG ATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCAT
genomic: GCAGCTTGTGAAAGAAATGCTAACCCAGgtgcatgact ... tgctctgcagATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACAGGGAACCATCTGAAAGGGTCACGGCCTCTTATAACATTTTCTACAAATTTTGATGAACAACCTCACTGGCAGCTTGTGAAAGAAATGCTAACCCAGgtgcatgactgatttgatatgttattttgctctacatgcattcttatcaatgaacaagttgatcatgcactagactaaataactaatctttatcaactta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA