1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTCTAGACCCTTAGCTGCTCGTAACCTGGAGCTGCAGGGAAATTTAGATTTTGCGCTTCCACAACCAAGAAGCATTCACACTTCAGTTAAAGTATCCAATgtaagtgaaatgaaatatattttgccactcaatgcaatatctttgctaagattaaaaaatgttatattaatttgaaattgagagtaatcttcaagtaata...
species | Oryza sativa |
transcript | LOC_Os02g36500.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGCGCTTCCACAACCAAGAAGCATTCACACTTCAGTTAAAGTATCCAAT CCTGCCGGAGGTCCGAGCAATATCATGTTTGGGGAGGAGCCGGCGGTCAAGEST: gi|86507967|gb|CI150600.1|CI150600
genomic: TTGCGCTTCCACAACCAAGAAGCATTCACACTTCAGTTAAAGTATCCAATgtaagtgaaa ... acatgtgtagCCTGCCGGAGGTCCGAGCAATATCATGTTTGGGGAGGAGCCGGCGGTCAAG
EST: TTGCGCTTCCACAACCAAGAAGCATTCACACTTCAGTTAAAGTATCCAAT CCTGCCGGAGGTCCGAGCAATATCATGTTTGGGGAGGAGCCGGCGGTCAAGEST: gi|89168743|gb|CI020824.1|CI020824
genomic: TTGCGCTTCCACAACCAAGAAGCATTCACACTTCAGTTAAAGTATCCAATgtaagtgaaa ... acatgtgtagCCTGCCGGAGGTCCGAGCAATATCATGTTTGGGGAGGAGCCGGCGGTCAAG
EST: TTGCGCTTCCACAACCAAGAAGCATTCACACTTCAGTTAAAGTATCCAAT CCTGCCGGAGGTCCGAGCAATATCATGTTTGGGGAGGAGCCGGCGGTCAAGEST: gi|58674341|gb|CK063027.1|CK063027
genomic: TTGCGCTTCCACAACCAAGAAGCATTCACACTTCAGTTAAAGTATCCAATgtaagtgaaa ... acatgtgtagCCTGCCGGAGGTCCGAGCAATATCATGTTTGGGGAGGAGCCGGCGGTCAAG
EST: TTGCGCTTCCACAACCAAGAAGCATTCACACTTCAGTTAAAGTATCCAAT CCTGCCGGAGGTCCGAGCAATATCATGTTTGGGGAGGAGCCGGCGGTCAAGEST: gi|88543385|gb|CI473388.1|CI473388
genomic: TTGCGCTTCCACAACCAAGAAGCATTCACACTTCAGTTAAAGTATCCAATgtaagtgaaa ... acatgtgtagCCTGCCGGAGGTCCGAGCAATATCATGTTTGGGGAGGAGCCGGCGGTCAAG
EST: ACACTTCAGTTAAAGTATCCAAT CCTGCCGGAGGTCCGAGCAATATCATGTTTGGGGAGGAGCCGGCGGTCAAG
genomic: ACACTTCAGTTAAAGTATCCAATgtaagtgaaa ... acatgtgtagCCTGCCGGAGGTCCGAGCAATATCATGTTTGGGGAGGAGCCGGCGGTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTAGACCCTTAGCTGCTCGTAACCTGGAGCTGCAGGGAAATTTAGATTTTGCGCTTCCACAACCAAGAAGCATTCACACTTCAGTTAAAGTATCCAATgtaagtgaaatgaaatatattttgccactcaatgcaatatctttgctaagattaaaaaatgttatattaatttgaaattgagagtaatcttcaagtaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat