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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTTGGAGGACAAGTACCCTGAGCACCCTCTTTTACCTCAAGACCTTAAAATGAAGGCCTTGAATCTCCAGgtaatgatagattctgcactgctatgcgcaggatgatgacctcaattaaacattccatttgatatacaagtgctatttgtaatttgttgaggttgagcag...

Basic information

species Oryza sativa
transcript LOC_Os02g35590.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g35590.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G064255_T02 (Zea mays), 5'ss of exon 4
TATTTGGAGGACAAGTACCCTGAGCACCCTCTTTTACCTCAAGACCTTAAAATGAAGGCCTTGAATCTCCAGgtaatgatagattctgca---ctgctatgcgcaggatgatgacctcaattaaacattccatttgatatacaagtgctatttgtaatttgttgaggttgagcag
|||||||||||||||||||| ||||  |||||| |||||||||||||| ||| ||| || ||||||| |||||||||||||| |||||||   |   | |   || |||   |||| ||   | | |||    | |                                       
TATTTGGAGGACAAGTACCCAGAGCCTCCTCTTCTACCTCAAGACCTTCAAAAGAAAGCTTTGAATCACCAGgtaatgataggttctgcaacccccttttttccatgattgcgaccacatccacatattgttgtag---------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163920379|gb|EG714466.1|EG714466
EST:     AGCACCCTCTTTTACCTCAAGACCTTAAAATGAAGGCCTTGAATCTCCAG                         ATAGCAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTA
genomic: AGCACCCTCTTTTACCTCAAGACCTTAAAATGAAGGCCTTGAATCTCCAGgtaatgatag ... tttatggcagATAGCAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTA