Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTTTCCTGGTATTAGCATACCCCCAGAAGGGCTTCCTTCCTTTCAACCTGGCCAGCCATGGTCAGTAAAGGTTCCTGGTAATCCTGCTCCAATTGCTgtaagttccccttcttttctttttttgttccctttacattttggttgccaaaaagattgtagttatgaaattctgttagttatgtgcaagtttttcattgccatacatgcttaacgcag

Basic information

species Oryza sativa
transcript LOC_Os02g35160.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g35160.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G128189_T01 (Zea mays), 5'ss of exon 4
GATGTTTCCTGGTATTAGCATACCCCCAGAAGGGCTTCCTTCCTTTCAACCTGGCCAGCCATGGTCAGTAAAGGTTCCTGGTAATCCTGCTCCAATTGCTgtaagttccccttcttttctttt--tttgttccctttacattttggttgccaaaaagattgtagttatgaaattctgttagttatgtgcaagtttttcattgccatacatgcttaacgcag
||||||||||||||| |||||||| ||||||||| |||| || ||| || ||||||| |||||| ||||||| ||||||||||| |||||| ||||||| |||||||   | | ||||||| |   |  ||   |  | | |||  |  |    ||   | || | |  |  |||    || |||  |   |||||| |     || |||     || |||
GATGTTTCCTGGTATCAGCATACCTCCAGAAGGGTTTCCATCTTTTGAAGCTGGCCAACCATGGGCAGTAAAAGTTCCTGGTAACCCTGCTGCAATTGCGgtaagtttttcatattttcttgtaactgattttgtccagagttt--taactggtaaagctcta-tcagcatgttc----agatatacg---gttttttaccattatgcat----tacacag