1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCGCCATGATTACTATGCTTTAATTGCTGGCGGACAAGAAGAAATTCCACGCCTGTTCCGTAGATGGATAACTCCGCAAGAACCACCTGGGAGGAATGTGgtatgctgctttctcttctttattttgggaagtgaaaaatggttgcactgcgatgtcatacttattctggattttgaaaaagttcag
species | Oryza sativa |
transcript | LOC_Os02g33230.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCCTGTTCCGTAGATGGATAACTCCGCAAGAACCACCTGGGAGGAATGTG GTGCTTACTGTTGGTGCACTACACCAAGCTGATTCTGCTGCACTGCGCCTTEST: gi|29660002|gb|CB656277.1|CB656277
genomic: GCCTGTTCCGTAGATGGATAACTCCGCAAGAACCACCTGGGAGGAATGTGgtatgctgct ... aaaagttcagGTGCTTACTGTTGGTGCACTACACCAAGCTGATTCTGCTGCACTGCGCCTT
EST: GCCTGTTCCGTAGATGGATAACTCCGCAAGAACCACCTGGGAGGAATGTG GTGCTTACTGTTGGTGCACTACACCAAGCTGATTCTGCTGCACTGCGCCTTEST: gi|218499017|gb|FG959227.1|FG959227
genomic: GCCTGTTCCGTAGATGGATAACTCCGCAAGAACCACCTGGGAGGAATGTGgtatgctgct ... aaaagttcagGTGCTTACTGTTGGTGCACTACACCAAGCTGATTCTGCTGCACTGCGCCTT
EST: GCCTGTTCCGTAAATGGATAACTCCGCAAGAACCACCTGGGAGGAATGTG GTGCTTACTGTTGGTGCACTACACCAAGCTGATTCTGCTGCACTGGGCCTTEST: gi|40486326|gb|BX897909.1|BX897909
genomic: GCCTGTTCCGTAGATGGATAACTCCGCAAGAACCACCTGGGAGGAATGTGgtatgctgct ... aaaagttcagGTGCTTACTGTTGGTGCACTACACCAAGCTGATTCTGCTGCACTGCGCCTT
EST: GCCTGTTCCGTAGATGGATAACTCCGCAAGAACCACCTGGGAGGAATGTG GTGCTTACTGTTGGTGCACTACACCAAGCTGATTCTGCTGCACTGCGCCTT
genomic: GCCTGTTCCGTAGATGGATAACTCCGCAAGAACCACCTGGGAGGAATGTGgtatgctgct ... aaaagttcagGTGCTTACTGTTGGTGCACTACACCAAGCTGATTCTGCTGCACTGCGCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGCCATGATTACTATGCTTTAATTGCTGGCGGACAAGAAGAAATTCCACGCCTGTTCCGTAGATGGATAACTCCGCAAGAACCACCTGGGAGGAATGTGgtatgctgctttctcttctttattttgggaagtgaaaaatggttgcactgcgatgtcatacttattctggattttgaaaaagttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA