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TAGCAGACACTATCAGTCTCCCATGTCGAGTTGTGAGGGGATGCAGGTACTGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatcctgatgaatgacttgcactatttctacagattttgggtcatcaaaggttaaaaaagagagagaatatgaagaaagaattgtgccccagtt...
species | Oryza sativa |
transcript | LOC_Os02g32610.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAG GGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGAEST: gi|29660722|gb|CB656997.1|CB656997
genomic: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatc ... ttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
EST: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAG GGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGAEST: gi|58657512|gb|CK046192.1|CK046192
genomic: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatc ... ttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
EST: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAGTGACA- GGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGAEST: gi|29680442|gb|CB676717.1|CB676717
genomic: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatc ... ttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
EST: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAG GGAATATCTGATTGATTTGATAGGGAACACAGGCTTCTTATCTGAACCTGAEST: gi|58691963|gb|CK080650.1|CK080650
genomic: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatc ... ttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
EST: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAG GGAATATCTGATAGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGAEST: gi|29615687|gb|CB620699.1|CB620699
genomic: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatc ... ttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
EST: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAG GGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGAEST: gi|29678549|gb|CB674824.1|CB674824
genomic: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatc ... ttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
EST: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAG GGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGAEST: gi|29675289|gb|CB671564.1|CB671564
genomic: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatc ... ttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
EST: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAG GGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGAEST: gi|66922784|gb|CX109632.1|CX109632
genomic: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatc ... ttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
EST: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAG GGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
genomic: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatc ... ttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGCAGACACTATCAGTCTCCCATGTCGAGTTGTGAGGGGATGCAGGTACTGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatcctgatgaatgacttgcactatttctacagattttgggtcatcaaaggttaaaaaagagagagaatatgaagaaagaattgtgccccagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaagaa