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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCAGACACTATCAGTCTCCCATGTCGAGTTGTGAGGGGATGCAGGTACTGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatcctgatgaatgacttgcactatttctacagattttgggtcatcaaaggttaaaaaagagagagaatatgaagaaagaattgtgccccagtt...

Basic information

species Oryza sativa
transcript LOC_Os02g32610.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29657929|gb|CB654204.1|CB654204
EST:     TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAG                         GGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
genomic: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatc ... ttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
EST: gi|29660722|gb|CB656997.1|CB656997
EST:     TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAG                         GGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
genomic: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatc ... ttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
EST: gi|58657512|gb|CK046192.1|CK046192
EST:     TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAGTGACA-                         GGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
genomic: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatc ... ttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
EST: gi|29680442|gb|CB676717.1|CB676717
EST:     TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAG                         GGAATATCTGATTGATTTGATAGGGAACACAGGCTTCTTATCTGAACCTGA
genomic: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatc ... ttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
EST: gi|58691963|gb|CK080650.1|CK080650
EST:     TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAG                         GGAATATCTGATAGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
genomic: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatc ... ttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
EST: gi|29615687|gb|CB620699.1|CB620699
EST:     TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAG                         GGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
genomic: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatc ... ttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
EST: gi|29678549|gb|CB674824.1|CB674824
EST:     TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAG                         GGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
genomic: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatc ... ttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
EST: gi|29675289|gb|CB671564.1|CB671564
EST:     TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAG                         GGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
genomic: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatc ... ttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
EST: gi|66922784|gb|CX109632.1|CX109632
EST:     TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAG                         GGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA
genomic: TGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatc ... ttggtatcagGGAATATCTGATTGATTTGATAGGGAACCCAGGCTTCTTATCTGAACCTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAGCAGACACTATCAGTCTCCCATGTCGAGTTGTGAGGGGATGCAGGTACTGCAAATCTGCTGGTGCTGCTTCATGCCTGGTGCACTTTGGTAATGACAGgtttgtaatcctgatgaatgacttgcactatttctacagattttgggtcatcaaaggttaaaaaagagagagaatatgaagaaagaattgtgccccagtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT