Sequence
atgc intronic sequence ATGC exonic sequenceAACAACTTGGAGGATATATACAGCCTTTTCCGGTTTTTGAGGGTTGAACCGTGGAGGAACTGGTCTTTgtaagtggatcatttgtttaccttcattgactagttttgttctcttgtcaaaattgtgtagaccttgtgaaacttagatgcatgtagtcatagaaatcaa...
Basic information
species | Oryza sativa |
transcript | LOC_Os02g32570.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g32570.1 (Oryza sativa), 5'ss of exon 11
lower sequence: AT5G22750.1 (Arabidopsis thaliana), 5'ss of exon 11
AACAACTTGGAGGATATATACAGCCTTTTCCGGTTTTTGAGGGTTGAACCGTGGAGGAACTGGTCTTTgtaagtggatcatttgtttaccttcattgactagttttgttctcttgt-caaaattgtgtagaccttgtgaaacttagatgcatgt-agtcatagaaatcaa
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AACAATCTGGAGGATTTATACAGCCTTCTACGGTTTTTGAGGATTGAACCATGGGGAACTTGGGCATGgtaag--ggtccttatctatctttggttggaaacacataacgtttggtatggaattacttgaagctttttaatttggaacatattttattcttag-------
upper sequence: LOC_Os02g32570.1 (Oryza sativa), 5'ss of exon 11
lower sequence: Vv06s0061g01190.t01 (Vitis vinifera), 5'ss of exon 11
AACAACTTGGAGGATATATACAGCCTTTTCCGGTTTTTGAGGGTTGAACCGTGGAGGAACTGGTCTTTgtaagtggatcatttgtttacctt-cattgactagttttgttctcttgtcaaaattgtgtagaccttgtgaaacttagatgcatgtagtcatagaaatcaa-
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AACAACCTGGAGGACATTTACAGCCTTCTTCGGTTTTTGAGGGTGGAACCTTGGGGAAACTGGGCATGgtgtgttctcccttgttttatattgtgattatacattatattaggtgcttcttaatatatctcttgcttgccaccaaaaaaattgtcattata--aattattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|66917088|gb|CX103936.1|CX103936EST: TACAGCCTTTTCCGGTTTTTGAGGGTTGAACCGTGGAGGAACTGGTCTTT GTGGCATAAACTTGTGCAAAAACCATATGAAGAAGGCGATGAAAGAGGTTT
genomic: TACAGCCTTTTCCGGTTTTTGAGGGTTGAACCGTGGAGGAACTGGTCTTTgtaagtggat ... tgctattcagGTGGCATAAACTTGTGCAAAAACCATATGAAGAAGGCGATGAAAGAGGTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACAACTTGGAGGATATATACAGCCTTTTCCGGTTTTTGAGGGTTGAACCGTGGAGGAACTGGTCTTTgtaagtggatcatttgtttaccttcattgactagttttgttctcttgtcaaaattgtgtagaccttgtgaaacttagatgcatgtagtcatagaaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA