1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AACTAAGTATAAGGATGCTCCACCCACTGCATTTGATCTTTTCAAGATGTGCCATTGCAACAGCAATACGAGTTTTAATGAGCCTGTAAAGAATGTTATTgtgagttacatttttcttttatcttttgcaattatatattaatgcgaataaaatgtgttttgtgatttcttatcttcctattgctag
species | Oryza sativa |
transcript | LOC_Os02g27594.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCCATTGCAACAGCAATACGAGTTTTAATGAGCCTGTAAAGAATGTTATT GCTGAGATGGAAGTTCATTGATAATCCTGCACAAGAAGGGCAAGATATGATEST: gi|27577231|gb|CA999925.1|CA999925
genomic: GCCATTGCAACAGCAATACGAGTTTTAATGAGCCTGTAAAGAATGTTATTgtgagttaca ... ctattgctagGCTGAGATGGAAGTTCATTGATAATCCTGCACAAGAAGGGCAAGATATGAT
EST: GCCATTGCAACAGCAATACGAGTTTTAATGAGCCTGTAAAGAATGTTATT GCTGAGATGGAAGTTCATTGATAATCCTGCACAAGAAGGGCAAGATATGATEST: gi|38480502|gb|CF964591.1|CF964591
genomic: GCCATTGCAACAGCAATACGAGTTTTAATGAGCCTGTAAAGAATGTTATTgtgagttaca ... ctattgctagGCTGAGATGGAAGTTCATTGATAATCCTGCACAAGAAGGGCAAGATATGAT
EST: GCCATTGCAACAGCAATACGAGTTTTAATGAGCCTGTAAAGAATGTTATT GCTGAGATGGAAGTTCATTGATGGTCCTGCACAAGAAGGGCAAGATATGATEST: gi|88257092|gb|CI359480.1|CI359480
genomic: GCCATTGCAACAGCAATACGAGTTTTAATGAGCCTGTAAAGAATGTTATTgtgagttaca ... ctattgctagGCTGAGATGGAAGTTCATTGATAATCCTGCACAAGAAGGGCAAGATATGAT
EST: GCCATTGCAACAGCAATACGAGTTTTAATGAGCCTGTAAAGAATGTTATT GCTGAGATGGAAGTTCATTGATAATCCTGCACAAGAAGGGCAAGATATGATEST: gi|88374682|gb|CI518549.1|CI518549
genomic: GCCATTGCAACAGCAATACGAGTTTTAATGAGCCTGTAAAGAATGTTATTgtgagttaca ... ctattgctagGCTGAGATGGAAGTTCATTGATAATCCTGCACAAGAAGGGCAAGATATGAT
EST: GCCATTGCAACAGCAATACGAGTTTTAATGAGCCTGTAAAGAATGTTATT GCTGAGATGGAAGTTCATTGATAATCCTGCACAAGAAGGGCAAGATATGATEST: gi|86496213|gb|CI138846.1|CI138846
genomic: GCCATTGCAACAGCAATACGAGTTTTAATGAGCCTGTAAAGAATGTTATTgtgagttaca ... ctattgctagGCTGAGATGGAAGTTCATTGATAATCCTGCACAAGAAGGGCAAGATATGAT
EST: GCCATTGCAACAGCAATACGAGTTTTAATGAGCCTGTAAAGAATGTTATT GCTGAGATGGAAGTTCATTGATAATCCTGCACAAGAAGGGCAAGATATGAT
genomic: GCCATTGCAACAGCAATACGAGTTTTAATGAGCCTGTAAAGAATGTTATTgtgagttaca ... ctattgctagGCTGAGATGGAAGTTCATTGATAATCCTGCACAAGAAGGGCAAGATATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTAAGTATAAGGATGCTCCACCCACTGCATTTGATCTTTTCAAGATGTGCCATTGCAACAGCAATACGAGTTTTAATGAGCCTGTAAAGAATGTTATTgtgagttacatttttcttttatcttttgcaattatatattaatgcgaataaaatgtgttttgtgatttcttatcttcctattgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA