1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGCGGATACCCTAGACCCTGCTCTGTTACGTCCAGGTAGATTGGACAGGAAAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttgtttttttttccccaaaatgtgtgtccttcgcaggatattactgactgatgggtattgtttggtagagctttatattgaaggttaagtttc...
species | Oryza sativa |
transcript | LOC_Os02g21970.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|88247517|gb|CI247366.1|CI247366
genomic: AGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|88993480|gb|CI110301.1|CI110301
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: CAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|89194535|gb|CI116972.1|CI116972
genomic: CAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: TCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|88221562|gb|CI221518.1|CI221518
genomic: TCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: GATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|29659074|gb|CB655349.1|CB655349
genomic: GATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|11564715|gb|AU165351.1|AU165351
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|87035104|gb|CI189727.1|CI189727
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|86501980|gb|CI144613.1|CI144613
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|88221302|gb|CI221258.1|CI221258
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|29624229|gb|CB629240.1|CB629240
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|87033424|gb|CI188048.1|CI188048
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: TTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|86503025|gb|CI145658.1|CI145658
genomic: TTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|29656424|gb|CB652699.1|CB652699
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|86505292|gb|CI147925.1|CI147925
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|88843994|gb|CI008575.1|CI008575
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: GGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|29683628|gb|CB679903.1|CB679903
genomic: GGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|25798027|gb|CA753988.1|CA753988
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|89184394|gb|CI046959.1|CI046959
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|89190189|gb|CI392239.1|CI392239
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: TCGGCACAAGAGGC-TGTTTTCCAA GTCT-TACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|86538182|gb|CI178388.1|CI178388
genomic: TCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: CCAGATCGTCGTCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|29636555|gb|CB641564.1|CB641564
genomic: CCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|86859555|gb|CI278928.1|CI278928
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|89177204|gb|CI043707.1|CI043707
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: TTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|29624228|gb|CB629239.1|CB629239
genomic: TTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|88221274|gb|CI221230.1|CI221230
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|86836316|gb|CI348258.1|CI348258
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAGAGGCTTCTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGCTTGATTTGGAAGATTATEST: gi|86601860|gb|CI258536.1|CI258536
genomic: AAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|89183380|gb|CI045945.1|CI045945
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|86832828|gb|CI332434.1|CI332434
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: GGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|86413612|gb|CI019197.1|CI019197
genomic: GGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: CGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAGATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|86495973|gb|CI138606.1|CI138606
genomic: CGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|29628786|gb|CB633797.1|CB633797
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|86503152|gb|CI145785.1|CI145785
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|86427789|gb|CI072886.1|CI072886
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|88227444|gb|CI226924.1|CI226924
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|29624299|gb|CB629310.1|CB629310
genomic: AGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|89168795|gb|CI020876.1|CI020876
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|88248544|gb|CI248393.1|CI248393
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATEST: gi|86432093|gb|CI085704.1|CI085704
genomic: AAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
EST: TCGTCGGCAGAAGAGGCTTGTTTTCCAA GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
genomic: TCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttg ... ctatttccagGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGGATACCCTAGACCCTGCTCTGTTACGTCCAGGTAGATTGGACAGGAAAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttgtttttttttccccaaaatgtgtgtccttcgcaggatattactgactgatgggtattgtttggtagagctttatattgaaggttaagtttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG