1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTATGGCGGTCCCAGTGTCCAGCTTGTAAGTGACTCATGGATAAGTACAGTTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGgtaactattctttcctctatttttttttctttgctctttgtttaacaagatagattccgattgaggattttttttttctgttttcactttggtccataat...
species | Oryza sativa |
transcript | LOC_Os02g18850.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAG ATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCEST: gi|218488571|gb|FG946162.1|FG946162
genomic: TTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGgtaactattc ... ctcctggcagATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTC
EST: TTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAG ATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCEST: gi|56157289|gb|D40532.2|D40532
genomic: TTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGgtaactattc ... ctcctggcagATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTC
EST: TTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAG ATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCEST: gi|572202|gb|D41713.1|D41713
genomic: TTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGgtaactattc ... ctcctggcagATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTC
EST: TTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAG ATGGACAATCGNGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCEST: gi|58602570|gb|CK013098.1|CK013098
genomic: TTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGgtaactattc ... ctcctggcagATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTC
EST: TTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAG ATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCEST: gi|27545961|gb|CA764172.2|CA764172
genomic: TTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGgtaactattc ... ctcctggcagATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTC
EST: TTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAG ATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTC
genomic: TTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGgtaactattc ... ctcctggcagATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATGGCGGTCCCAGTGTCCAGCTTGTAAGTGACTCATGGATAAGTACAGTTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGgtaactattctttcctctatttttttttctttgctctttgtttaacaagatagattccgattgaggattttttttttctgttttcactttggtccataat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG