Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATAACTACATGCTCCGCCTGTTTTGCATTGGTTTCACCAAGCGCCGCCCAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttttgtcatacttttttgcatgttctgtactaggtaagttcttgttttttgagatgaggtatgttcttgttgtttactttatttttgtccactgtttgaag

Basic information

species Oryza sativa
transcript LOC_Os02g18550.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33687809|gb|CF316048.1|CF316048
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATTGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|218482705|gb|FG963546.1|FG963546
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|89178872|gb|CI391870.1|CI391870
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|33802917|gb|CF327329.1|CF327329
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|3759951|gb|C97209.1|C97209
EST:     AAATCAGGTGAAGCGTACCTGTTACGGTCAGGGTAAGCCAGATNCGGCAG                         ATCCGCCG-AAGAT
genomic: AA-TCAGGTGAAGCGTACCTGTTACGCTCAGGCTA-GCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGAT
EST: gi|33687683|gb|CF315922.1|CF315922
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|88995348|gb|CI036923.1|CI036923
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|218486263|gb|FG964022.1|FG964022
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|58678754|gb|CK067441.1|CK067441
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAAGCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|10794795|gb|AU108761.1|AU108761
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|88217506|gb|CI217355.1|CI217355
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|88518816|gb|CI445662.1|CI445662
EST:     CTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|33690861|gb|CF319100.1|CF319100
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|89190380|gb|CI015345.1|CI015345
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|33796645|gb|CF324190.1|CF324190
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|88283951|gb|CI405397.1|CI405397
EST:     CTCAGGGTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|702627|gb|D48918.1|D48918
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGGATCATGGCCAACCAGGCAATCAACATG
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAG-ATCATGGCCAACCAGGCA-TCAACATG
EST: gi|163917976|gb|EG713138.1|EG713138
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|89192542|gb|CI016551.1|CI016551
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|33690862|gb|CF319101.1|CF319101
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|33692844|gb|CF321083.1|CF321083
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGGTCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|218491751|gb|FG947265.1|FG947265
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|8324478|gb|AU091628.1|AU091628
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|58682236|gb|CK070923.1|CK070923
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|3768002|gb|AU032029.1|AU032029
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|89193315|gb|CI050613.1|CI050613
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|55437151|gb|CV731774.1|CV731774
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|117246664|gb|CT863247.1|CT863247
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|218484338|gb|FG944231.1|FG944231
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|88476656|gb|CI413927.1|CI413927
EST:     AGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: AGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|56157462|gb|D48935.2|D48935
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|58677313|gb|CK066000.1|CK066000
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|58692409|gb|CK081096.1|CK081096
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|33804300|gb|CF328024.1|CF328024
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|58662864|gb|CK051550.1|CK051550
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|23513540|gb|BU673185.1|BU673185
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|86546183|gb|CI186389.1|CI186389
EST:     CAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|33693182|gb|CF321421.1|CF321421
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|33687810|gb|CF316049.1|CF316049
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATTGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|58599545|gb|CK010073.1|CK010073
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|3766601|gb|AU030711.1|AU030711
EST:     CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
genomic: CAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC
EST: gi|86523587|gb|CI163793.1|CI163793
EST:     CTGTTACGCTCAGGCTAGCCAGATCCGGCAG                         ATCCGCCGGAAGATGGTTGAGATCATGGCC-ACCAGGCATCAACATGTGAC
genomic: CTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 73 (downstream exon)
Score: 84

AGATAACTACATGCTCCGCCTGTTTTGCATTGGTTTCACCAAGCGCCGCCCAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttt ... ctgtttgaagATCCGCCGGAAGATGGTTGAGATCATGGCCAACCAGGCATCAACATGTGACTTGAAAGAACTGGTTTCAAAATTCATCCCTGAAGTCATTGGAAAGGAGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGATAACTACATGCTCCGCCTGTTTTGCATTGGTTTCACCAAGCGCCGCCCAAATCAGGTGAAGCGTACCTGTTACGCTCAGGCTAGCCAGATCCGGCAGgtaaaagttttgtcatacttttttgcatgttctgtactaggtaagttcttgttttttgagatgaggtatgttcttgttgtttactttatttttgtccactgtttgaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC